OR52B1P Olfactory Receptor
| Gene Symbol | OR52B1P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | B |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-69, PJCG4, HsOR11.3.100P, ORL3558 |
| External Ids | HGNC: 15206 GeneBank: AB065764, AF359415, BK004596, NG_004225 ORDB: ORL3558 |
| Build #39 labels | OR52B1P |
| Chromosomal location | 11:6,151,595-6,152,549 (-) |
| Cluster | 11@6 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52B2 | 70.03% | 307 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52B22P | 74% | 313 |
| Mouse | Or52b1 | 85% | 315 |
| Rat | Or52b1 | 84% | 315 |
| Cow | OR52B2 | 70% | 307 |
| Orang | OR52H1 | 57% | 306 |
| Horse | OR52B36P | 77% | 311 |
| Chimp | OR52B2P | 70% | 308 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | CD642260 |
| mRNA | AB529252 |
| GNF Atlas2 | gnf1h11080_at |
Sequence information
| Nucleotide sequence |
ATGTTTGGTGCTAATCTCACCACCTTCCATCCCACTCTATTCATTCTCCTTGGCATCCCA GGACTGGAGCAATACCACATCTGGCTTTCCATTCCTTTCTACCTTATGTACATCACTGCA GTCTTGGGAAATGGAGCCCTCATCCTAGTTGTCCTCAGTGAACACACCCTCCATGTCTTC CTATCCATGCTGGCTGGCACTGATATCCTGCTATCCACCACCACTGTGCCTAAGGCCTTG GCGATCTTCTGGGTCCACGCTGGGGAGATAGCCTTTGATGCCTGCATTACTCAGATGTTT TTCATTCATGTTGCCTTTGTGGCTGAGTCAGGAATCCTGCTGGCCATGGCATTTGACAGT TATGTAGCCATTTGTACTCCCTTGAGATACACTACCATCTTAACTTCTATGGTAAATGGA AAAATGACCCTGACAATCTGGGGACAAAGCATTGGGACAATTTTTCCTGTCATATTCCTG CTGAAGAGGCTGCCATACTGTCAGACCAATATCATCCCCCACTCATACTGTGAGCACATT GGGGTGGCCCAATTGGCCTGTGCTGACATAACTGTCAATATCTGGTATGGCTTTTCAGTG CCAATGGCATCGGTTTTGGTAGATGTTGCATTCATTGGTTTTTCCTACACTTTGATCCTC CAGGCTGTGTTTAGACTTCCTTCCCAGGAGTCCCAGCACAAAGCTCTTAACACCTGTGGT TCTACATTGGAGTTGTTCTCCTCTTCTTCATCCCATCATTTTTTACTTTCCTGACCCACC GCTTTGGCAAGAATATCCCCCATCATGTCCACATACTTCTGGCAAATCTCTACTTGCTTG TTCCCCCATGCTTAACCCCATTATCTACGGAGAGAAGACCAAGCAAATCAGGGACAGTAT GGCTCATATGTTATCTGTGGTGGGGAAGTCTTGAGACATCATGGTCTCTTCACAG |
| Conceptual translation |
MFGANLTTFHPTLFILLGIPGLEQYHIWLSIPFYLMYITAVLGNGALILVVLSEHTLHVF LSMLAGTDILLSTTTVPKALAIFWVHAGEIAFDACITQMFFIHVAFVAESGILLAMAFDS YVAICTPLRYTTILTSMVNGKMTLTIWGQSIGTIFPVIFLLKRLPYCQTNIIPHSYCEHI GVAQLACADITVNIWYGFSVPMASVLVDVAFIGFSYTLILQAVFRLPSQESQHKALNTCG STL/VVLLFFIPSFFTFLTHRFGKNIPHHVHILLANLYLLV/PMLNPIIYGEKTKQIR DSMAHMLSVVGKSXIMVSSQ Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 6,173,364 | 6,173,364 | SNP | A/T | rs325695 (DbSNP) | |
| 11 | 6,172,833 | 6,172,833 | SNP | G/A | rs325694 (DbSNP) | |
| 11 | 6,173,346 | 6,173,346 | SNP | G/T | rs11826453 (DbSNP) | |
| 11 | 6,173,000 | 6,173,000 | SNP | G/T | rs17237074 (DbSNP) | |
| 11 | 6,151,603 | 6,151,603 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 6,151,770 | 6,151,770 | SNP | G/T | 1000GP (CEU) | |
| 11 | 6,152,116 | 6,152,116 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 11 | 6,152,134 | 6,152,134 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 11 | 6,152,112 | 6,152,112 | SNP | G/C | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 5,505,764 | 6,194,475 | CopyNumber | Variation_34458 (DGV) |
| 11 | 6,170,825 | 6,173,879 | Deletion | #201 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR52B1P.aApr07-unspliced | main_exon | CDS_partial | chr11 | 6,151,690 | 6,152,183 | - |