OR52B5P Olfactory Receptor
| Gene Symbol | OR52B5P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | B |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.3.72P, ORL3615 |
| External Ids | HGNC: 15210 GeneBank: AF209507, NG_004224 ORDB: ORL3615 |
| Build #39 labels | OR52B5P |
| Chromosomal location | 11:5,560,967-5,561,911 (+) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52B2 | 58.17% | 306 |
| OR52B3P | 56.05% | 314 |
| OR52B4 | 56.72% | 305 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52B6 | 61% | 310 |
| Mouse | Or52b3 | 60% | 314 |
| Rat | Or52b1 | 59% | 310 |
| Cow | OR52B3 | 60% | 314 |
| Orang | OR52B1P | 60% | 310 |
| Horse | OR52B3P | 60% | 310 |
| Chimp | OR52B2P | 59% | 310 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AF209507 |
Sequence information
| Nucleotide sequence |
ATGTCAGCTCCCAACCACTCCACTGCCAATCATGATATGTTTGTCCTCATTGGCGTTCCT GGCCTGAAGGAGCTGCACGTGTGGATCTCCATCCCCTTCTGTCTGATGTACCTGGTGGCT GTGTCAGGAAATGGTCTCCTTGTCTGTGTGGTGGCAGTGGAGCACAGTCTTCATGAACCT ATGTACCTTTTCCTCTCCATGCTGGCATTTTGGGATCTGATTCTATCCACATCTGCAGTA CCCAAAGCCTTGAGCATTTTCTGGTTTGATGATGTGGACATCTCCTTTGGTGGCTGTGTC ACTCAGCTCTTTTTTATGCATTTTGCCTTTGTAGCGGAGTCAGGCATTCTCTTGACCATG GCTTTCGACCGCTATGTGGCCATCTGCTACCCATTGAGGTATAGCACCATCCTTAGCCAC AGTGTTATTGGCAAAATTGGGGGTGTCGTGGTGTTCAGGAGTTTTGCAACTGTCTTCTCC ATCGTCTTCCTTGTGAAGCGTCTGCCCTTCTGCCGGACAAACATCATTGCCCACACCTTC TGTGAACACATGGGGCTGGCAAAGCTAGGTTGTTCTGAAATCACCATCAATATTTGGTAT GGAATCTCTGTACCACTACTCAGTGTTACGTTAGATATGGTGACAATAGTCATCTCCTAG GGGCTCATAGTTCAAGCAGTCTTCAGGCTGCCCTCCCTTGGTGCTTGGATGAAAGCACTC AGCACCTGTGGTTCCCATGGCAGTGTCATCCTCATGTTCTGCCTTCCAGGAATTTTCACT GTCATTGTTCAGCGCTTTGCCTGAAAATTTCCCAAGTATGTCCACATCCTGCTGGCCAAT CTCTATGTTCTTGTTCCCCCCATGATGAACCCAATTATCTATGGAGTAAAGACTAAACAG ATTCAGAAAGGGGTTGCCCTTGTGTTTTCTCCAAAAGGAAAATGT |
| Conceptual translation |
MSAPNHSTANHDMFVLIGVPGLKELHVWISIPFCLMYLVAVSGNGLLVCVVAVEHSLHEP MYLFLSMLAFWDLILSTSAVPKALSIFWFDDVDISFGGCVTQLFFMHFAFVAESGILLTM AFDRYVAICYPLRYSTILSHSVIGKIGGVVVFRSFATVFSIVFLVKRLPFCRTNIIAHTF CEHMGLAKLGCSEITINIWYGISVPLLSVTLDMVTIVISXLIVQAVFRLPSLGAWMKAL STCGSHGSVILMFCLPGIFTVIVQRFAXFPKYVHILLANLYVLVPPMMNPIIYGVKTKQ IQKGVALVFSPKGKC Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 11 | 5,561,130 | 5,561,130 | SNP | A/G | 1000GP (CEU) | |
| 11 | 5,561,200 | 5,561,200 | SNP | T/C | 1000GP (CEU) | |
| 11 | 5,561,332 | 5,561,332 | SNP | C/T | 1000GP (CEU) | |
| 11 | 5,561,355 | 5,561,355 | SNP | A/C | 1000GP (CEU) | |
| 11 | 5,561,369 | 5,561,369 | SNP | A/G | 1000GP (CEU) | |
| 11 | 5,561,828 | 5,561,828 | SNP | A/T | 1000GP (CEU, CHBJPT) | |
| 11 | 5,582,360 | 5,582,360 | SNP | A/G | rs11607280 (DbSNP) | |
| 11 | 5,582,430 | 5,582,430 | SNP | C/T | rs11607755 (DbSNP) | |
| 11 | 5,582,498 | 5,582,498 | SNP | C/T | rs56774399 (DbSNP) | |
| 11 | 5,582,562 | 5,582,562 | SNP | C/T | rs35563908 (DbSNP) | |
| 11 | 5,582,585 | 5,582,585 | SNP | A/C | rs11607312 (DbSNP) | |
| 11 | 5,582,599 | 5,582,599 | SNP | A/G | rs11607314 (DbSNP) | |
| 11 | 5,582,607 | 5,582,607 | SNP | C/A | rs2008544 (DbSNP) | |
| 11 | 5,583,058 | 5,583,058 | SNP | A/T | rs11038105 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 5,505,764 | 6,194,475 | CopyNumber | Variation_34458 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR52B5P.aApr07-unspliced | main_exon | CDS_partial | chr11 | 5,561,324 | 5,561,844 | + |