OR52E1P Olfactory Receptor
| Gene Symbol | OR52E1P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | E |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.3.45P |
| External Ids | HGNC: 14766 GeneBank: AB065801, NG_003197 |
| Build #39 labels | OR52E1 |
| Chromosomal location | 11:5,069,572-5,070,494 (+) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks | Segregating Pseudo Gene, a polymorphism of C->del at position 776 (rs5789358) |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52E2 | 68.08% | 307 |
| OR52E4 | 65.26% | 308 |
| OR52E8 | 64.47% | 304 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52E1 | 82% | 308 |
| Mouse | Or52e3 | 68% | 307 |
| Rat | Or52e51 | 73% | 307 |
| Cow | OR52E1 | 80% | 308 |
| Orang | OR52E3 | 66% | 308 |
| Horse | OR52E1 | 81% | 308 |
| Chimp | OR52E1 | 95% | 308 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h10689_at |
Sequence information
| Nucleotide sequence |
ATGAATACCACTCTATTTCATCCTTACTCTTTCCTTCTTCTGGGAATTCCTGGGCTGGAA AGTATGCATCTCTGGGTTGGTTTTCCTTTCTTTGCTGTGTTCCTGACAGCTGTCCTTGGG AATATCACCATCCTTTTTGTGATTCAGACTGACAGTAGTCTCCATCATCCCATGTTCTAC TTCCTGGCCATTCTGTCATCTATTGACCCGGGCCTGTCTACATCCACCATCCCTAAAATG CTTGGCACCTTCTGGTTTACCCTGAGAGAAATCTCCTTTGAAGGATGCCTTACCCAGATG TTCTTCATCCACCTGTGCACTGGCATGGAATCAGCTGTGCTTGTGGCCATGGCCTATGAT TGCTATGTGGCCATCTGTGACCCTCTTTGCTACACGTTGGTGCTGACAAACAAGGTGGTG TCAGTTATGGCACTGGCCATCTTTCTGAGACCCTTAGTCTTTGTCATACCCTTTGTTCTA TTTATCCTAAGGCTTCCATTTTGTGGACACCAAATTATTCCTCATACTTACGGTGAGCAC ATGGGCATTGCCCGCCTGTCTTGTGCCAGCATCAGGGTTAACATCATCTATGGCTTATGT GCCATCTCTATCCTGGTCTTTGACATCATAGCAATTGTCATTTCCTATGTACAGATCCTT TGTGCTGTATTTCTACTCTCTTCACATGATGCACGACTCAAGGCATTCAGCACCTGTGGC TCTCATGTGTGTGTCATGTTGACTTTCTATATGCCTGCATTTTTCTCATTCATGACCATA GGTTTGGTCGGAATATACCTCACTTTATCCACATTCTTCTGGCTAATTTCTATGTAGTCA TTCCACCTGCTCTCAACTCTGTAATTTATGGTGTCAGAACCAAACAGATTAGAGCACAAG TGCTGAAAATGTTTTTCAATAAA |
| Conceptual translation |
MNTTLFHPYSFLLLGIPGLESMHLWVGFPFFAVFLTAVLGNITILFVIQTDSSLHHPMFY FLAILSSIDPGLSTSTIPKMLGTFWFTLREISFEGCLTQMFFIHLCTGMESAVLVAMAYD CYVAICDPLCYTLVLTNKVVSVMALAIFLRPLVFVIPFVLFILRLPFCGHQIIPHTYGEH MGIARLSCASIRVNIIYGLCAISILVFDIIAIVISYVQILCAVFLLSSHDARLKAFSTCG SHVCVMLTFYMPAFFSFMTIGLVGIYLTLS/ILLANFYVVIPPALNSVIYGVRTKQIRA QVLKMFFNK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 5,091,577 | 5,091,576 | Ins(1) | -/C | rs5789358 (DbSNP) | |
| 11 | 5,091,579 | 5,091,578 | Ins(1) | -/C | rs35093737 (DbSNP) | |
| 11 | 5,091,633 | 5,091,633 | SNP | A/G | rs17352781 (DbSNP) | |
| 11 | 5,090,807 | 5,090,807 | SNP | A/T | rs2445313 (DbSNP) | |
| 11 | 5,091,332 | 5,091,332 | SNP | C/T | rs936143 (DbSNP) | |
| 11 | 5,091,563 | 5,091,563 | SNP | G/T | rs17267785 (DbSNP) | |
| 11 | 5,070,102 | 5,070,102 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 5,070,266 | 5,070,266 | SNP | G/A | 1000GP (CEU) | |
| 11 | 5,070,333 | 5,070,333 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,070,345 | 5,070,345 | SNP | G/C | 1000GP (CEU) | |
| 11 | 5,070,403 | 5,070,403 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,070,265 | 5,070,265 | SNP | C/T | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | T/A | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 4,907,893 | 5,135,331 | CopyNumber | Variation_3835 (DGV) |
| 11 | 5,087,292 | 5,125,991 | CopyNumber | Variation_5421 (DGV) |
| CopyNumber | 94 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.