OR52E7P Olfactory Receptor
| Gene Symbol | OR52E7P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | E |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-52, OR11-53, HsOR11.3.86P, ORL3526 |
| External Ids | HGNC: 15216 GeneBank: BK004686, BK004687, NG_004223 ORDB: ORL3526 |
| Build #39 labels | OR52E7P |
| Chromosomal location | 11:5,873,960-5,874,888 (+) |
| Cluster | 11@6 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52E4 | 59.27% | 302 |
| OR52E6 | 63.91% | 302 |
| OR52E8 | 65.56% | 302 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52E7 | 80% | 302 |
| Mouse | Or52e7 | 80% | 303 |
| Rat | Or52e7 | 79% | 306 |
| Cow | OR52E7 | 82% | 302 |
| Orang | OR52E3 | 57% | 304 |
| Horse | OR52E20P | 62% | 302 |
| Chimp | OR52E8 | 65% | 302 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | BQ432782 |
Sequence information
| Nucleotide sequence |
ATGTCTTCTCCCAATGTCACTGAACCCCACCTCTCTTCCTTCCTGTTGGTTAGGAATTCC AGGATTGGAAGCTGCACAACGCTGGCTAGGCTTTCCCTTCTGTGTTGTATATCTGATTGC TCTTGTTGGAAATCTTATCATTCTATTTGTTATCTGGACTGATAAAAACCTTCACCAACC CATGTTCTACTTTCTGGCCATGCTGTCAGTCATGACCTGAGTCTTTCTACATCTACTATC CCCAAGATGTTGGGCATCTTCTGGTTCAGCCTTCAGGAGTTGTGCTTTGGGTGCTGTGTT GCTCAAGTCTTTTTTATCCATTTTTTTTGCAGTCATGGAGAGCATTGTACTTCTTGTCAT GGGATTTGATCGCTATGTGGCTATTTGCAACCCCTTCAGGTAGACCAAGATCCTCACCAA CAGAATTACTGGTGTGATTGCTATGGTTGTGGTTCTTAGAAGCTTATGTATGATTGCTCC CATCATTTTTCTCCTCATGAGGCTGCCTTACTGTGGACATAGAATCATCCCTTATACCTA TTGTGAGCACATGGGAGTGGCTCGTCTGGCTTGTGCCAGCATCAGTGTCAATGTCTCTCA TGGTCTTGGGAATATTTTTATCTTGTTTCTGGATATGTTTCTTATCATCATCTCCTATGC TAGAATTTTATGCACAGTCTTTCACCTCCCTTCCCAAGAGGCCCACCTGAAGGCTCTTAA TACCTGTAGCTCCCATATCTGTGTCATCTTAGCATTTTTTGGCCCAGCTCTCTTCTCCTT TCTCACTCATCGCTTTGGTCATGGCATCCCACAGTATATCCATATTCTCCTGGCTAATCT CTATATATAGTCATTCCCCCTGCTCTTAACCCAGTCATTTATGGAGTTAGGACCAAGCAA ATCCAGGAGCGGGTAGAAAGTCTCTTTAC |
| Conceptual translation |
MSSPNVTEPHLSSFLL\GIPGLEAAQRWLGFPFCVVYLIALVGNLIILFVIWTDKNLHQ PMFYFLAMLSV/DLSLSTSTIPKMLGIFWFSLQELCFGCCVAQVFFIHFF\VMESIVL LVMGFDRYVAICNPFRXKILTNRITGVIAMVVVLRSLCMIAPIIFLLMRLPYCGHRIIP YTYCEHMGVARLACASISVNVSHGLGNIFILFLDMFLIIISYARILCTVFHLPSQEAHLK ALNTCSSHICVILAFFGPALFSFLT/SLWSWHPTVYPYSPGXLYIVIPPALNPVIYGV RTKQI/GAGRKSLY Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 5,895,414 | 5,895,414 | SNP | C/T | rs10838770 (DbSNP) | |
| 11 | 5,895,754 | 5,895,754 | SNP | C/T | rs10838772 (DbSNP) | |
| 11 | 5,895,618 | 5,895,618 | SNP | C/T | rs7395997 (DbSNP) | |
| 11 | 5,874,184 | 5,874,184 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,874,388 | 5,874,388 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 5,874,524 | 5,874,524 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,874,682 | 5,874,682 | SNP | C/T | 1000GP (CEU) | |
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 5,868,055 | 6,007,613 | CopyNumber | Variation_2903 (DGV) |
| 11 | 5,730,377 | 5,970,717 | CopyNumber | Variation_3836 (DGV) |
| 11 | 5,885,711 | 5,969,185 | CopyNumber | Variation_8676 (DGV) |
| 11 | 5,885,711 | 5,934,044 | CopyNumber | Variation_8677 (DGV) |
| 11 | 5,883,376 | 5,935,626 | CopyNumber | Variation_30541 (DGV) |
| 11 | 5,505,764 | 6,194,475 | CopyNumber | Variation_34458 (DGV) |
| 11 | 5,885,709 | 5,935,510 | CopyNumber | Variation_37668 (DGV) |
| 11 | 5,875,867 | 5,935,103 | CopyNumber | Variation_48859 (DGV) |
| 11 | 5,871,831 | 5,935,103 | CopyNumber | Variation_53856 (DGV) |
| 11 | 5,895,090 | 5,898,118 | Deletion, CopyNumber | #255 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.