OR52J1P Olfactory Receptor
| Gene Symbol | OR52J1P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | J |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.3.48P, ORL3487 |
| External Ids | HGNC: 14760 GeneBank: NG_002234 ORDB: ORL3487 |
| Build #39 labels | OR52J1P |
| Chromosomal location | 11:5,104,153-5,105,081 (+) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52J2P | 68.06% | 310 |
| OR52J3 | 71.38% | 311 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52J1 | 87% | 311 |
| Mouse | Or52j3 | 71% | 309 |
| Rat | Or52j3 | 70% | 309 |
| Cow | OR52J1 | 83% | 311 |
| Orang | OR52J1 | 94% | 311 |
| Horse | OR52J1 | 86% | 311 |
| Chimp | OR52J3 | 72% | 311 |
Sequence information
| Nucleotide sequence |
ATGTTCCACACCACCACCACCATTTTCCACCCAGACACCTTTTTTCTGACAGGCATCCCG GGACTTGAGGCTTTCCATGGCTGGATTTCCATGCCCTTTTGCTGTATTTACTTGATGCCT CTGCTGGGCAATGCTACAATTCTACTGACAATCTGGTCTGATCGTACTCTTCGGGACCCT ATGTTCTACTTTCTAGCCATCTTATCAGCCATAGACCTAGCCCTCTCAACATCCTCAGTG CCTCGTATGTTGGGTATCTTCTGGTTTGATGCACATAAAATTGGCTTTGGAGCCTGGGTA GCCCAGATGTTTCTGATACACACTTTCACAGGAATGGAGTCCACTGTGCTGCTGGCAATG GCCTTTGACCGCTATGTGGCCATCTGTACATCACTCCACTATACCTCTACTCTGACACCC CGAGTATTGGCAGGCATTGGTGTGAGCATTATAATGCGCCCAGTCCTGCTCATGTTGCCC ATTCTCTACCTAACCCATCGTCTGCCCTTCTGTGAGGCTCGGATTATTGCCCACTCCTAC TGTGAGCACATGGGTATTGCTAAGTTGGCCTGTGCTAGCATTCACATCAATGCTATTTAT GGGCTTTTTGTGGCTTCTTATTTTGGATGTCGCACTTGTTGGAATCTCCTATACCTACAT TCTCCGAGCTGTTTTCCACCTCCCATCTCAAGACGCTCGTCACAAAGCACTGAGAACGTG TGGCTCACATGTTGGGGTCATGTGTGTTTTCTATACACCCTCCCTCTTCTCCTTCCTCAC CTACCGATTTCGCAAAAAAAATTCCCCGTTATGTCCACATTCTTGTTGCCAACCTCTATG TGGTCATTCCACCTGCCCTCAATCCTATTATCTATGGTGTGAGAACCAAGCAGATTCATG AGCATGTGGTCCATACTTTCACCTCAAAG |
| Conceptual translation |
MFHTTTTIFHPDTFFLTGIPGLEAFHGWISMPFCCIYLMPLLGNATILLTIWSDRTLRDP MFYFLAILSAIDLALSTSSVPRMLGIFWFDAHKIGFGAWVAQMFLIHTFTGMESTVLLAM AFDRYVAICTSLHYTSTLTPRVLAGIGVSIIMRPVLLMLPILYLTHRLPFCEARIIAHSY CEHMGIAKLACASIHINAIYGLFV\LILDVALVGISYTYILRAVFHLPSQDARHKALRT CGSHVGVMCVFYTPSLFSFLTYRF\KKIPRYVHILVANLYVVIPPALNPIIYGVRTKQI HEHVVHTFTSK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 5,126,176 | 5,126,176 | Del(1) | -/A | rs71989119 (DbSNP) | |
| 11 | 5,126,182 | 5,126,182 | Del(1) | -/A | rs72517824 (DbSNP) | |
| 11 | 5,126,183 | 5,126,183 | Del(1) | -/A | rs11341011 (DbSNP) | |
| 11 | 5,125,549 | 5,125,549 | SNP | A/C | rs74049490 (DbSNP) | |
| 11 | 5,125,396 | 5,125,396 | SNP | A/C | rs7951907 (DbSNP) | |
| 11 | 5,126,309 | 5,126,309 | SNP | A/G | rs74049491 (DbSNP) | |
| 11 | 5,125,443 | 5,125,443 | SNP | A/G | rs2959189 (DbSNP) | |
| 11 | 5,126,125 | 5,126,125 | SNP | A/T | rs66816267 (DbSNP) | |
| 11 | 5,104,166 | 5,104,166 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 11 | 5,104,213 | 5,104,213 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 5,104,404 | 5,104,404 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 5,104,752 | 5,104,752 | SNP | T/C | 1000GP (CEU) | |
| 11 | 5,104,895 | 5,104,895 | SNP | T/A | 1000GP (CEU) | |
| 11 | 5,104,990 | 5,104,990 | SNP | A/G | 1000GP (CEU) | |
| 11 | 5,104,246 | 5,104,246 | SNP | C/T | 1000GP (CHBJPT) | |
| 11 | 5,104,799 | 5,104,799 | SNP | T/C | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | C/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 4,907,893 | 5,135,331 | CopyNumber | Variation_3835 (DGV) |
| 11 | 5,087,292 | 5,125,991 | CopyNumber | Variation_5421 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.