OR52J2P Olfactory Receptor
| Gene Symbol | OR52J2P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | J |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.3.42P, ORL3499 |
| External Ids | HGNC: 14797 ORDB: ORL3499 |
| Build #39 labels | OR52J4P, OR52J2P |
| Chromosomal location | 11:5,037,013-5,037,948 (+) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52J3 | 84.62% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52J3C | 87% | 308 |
| Dog | OR52J3 | 85% | 313 |
| Mouse | Or52j3 | 79% | 312 |
| Rat | Or52j3 | 79% | 312 |
| Cow | OR52J3DP | 81% | 312 |
| Cow | OR52J3 | 80% | 312 |
| Orang | OR52J2 | 93% | 303 |
| Horse | OR52J3 | 84% | 312 |
| Horse | OR52J3G | 83% | 310 |
| Horse | OR52J3E | 83% | 310 |
| Horse | OR52J3F | 83% | 299 |
| Chimp | OR52J3 | 86% | 312 |
Sequence information
| Nucleotide sequence |
ATGGCATACCATGGCAACAGGGGCACTTCTCACCCAGCCACATTTTTTCTCATTGGAATC CCAGGTCTGGAAGACGTCCATATGTGAATCTCCCTGCATTTCTGCTCTGTTTACCTTTTG GCTTTGCTGGGAAATGCTACCATTCTGTTAGTCATCAAGGCAGAACAGACCCTCCGGGAG CCCATGTTCTACTTTCTGGCCATCCTTTCCACAATTGATTTGGCCCTTTCTACAACCTCT GTGCCTCGTACGCTGGGTATCTTCTGGTTTGATGTTCATGAGATTAACTTTGGAGCTTGT GTGGCCCAGATGTTTCTGATCCATGCCTTCACTGGCATGGAGGCTGAGGTCCTGGTGGCC ATGGCCTTTGACCATTACGTGGCCATCTGCAATCCACTTCACTACACAAACATCTTGACA TGCCGGGTGCTGGTGGGCATCACTATGTGCATTTTAATTCGTCCAGTTCTGTTTACACTC CCGATAATCTATCTCATCTACCGTTTACCATTTTGTCAGGCTCATATAATAGCCCATTCC TACTATGAGCACATGGGCATTGCAAAATTGTCCTGTGGAAACATCCGTGTCAATGCTATC TATGGGCTCTTTGTGGTCTCCCTCTTTCTCCTGAACCTGGTCCTTATTGTTATCTCATAT GTTTACATTCTCTGTGCTGTCTTCTGCCTCCCATCACATGATGCTCGGCTAAAAGCCCTA AGCACATGTGGCTCTCATGTTGGGGTCATCTGTGTTTTCTATATCCCGTCGGTCTTCTCT TTCCTTACTCATTGATTTGGACACAACATTCCACATTACATTCACATTCTTGTTGCTACT CTCTATTTGGTTATCCCACCCTCTCTCAACCCCATCATTTGTGGGGTGAGGACTAAATGG AAACGAGAGCGAGTGCTCTATGTACTTACTAAAAAA |
| Conceptual translation |
MAYHGNRGTSHPATFFLIGIPGLEDVHMXSLHFCSVYLLALLGNATILLVIKAEQTLRE PMFYFLAILSTIDLALSTTSVPRTLGIFWFDVHEINFGACVAQMFLIHAFTGMEAEVLVA MAFDHYVAICNPLHYTNILTCRVLVGITMCILIRPVLFTLPIIYLIYRLPFCQAHIIAHS YYEHMGIAKLSCGNIRVNAIYGLFVVSLFLLNLVLIVISYVYILCAVFCLPSHDARLKAL STCGSHVGVICVFYIPSVFSFLTHXGHNIPHYIHILVATLYLVIPPSLNPIICGVRTKW KRERVLYVLTKK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 5,058,951 | 5,058,950 | Ins(1) | -/G | rs35624561 (DbSNP) | |
| 11 | 5,058,616 | 5,058,616 | SNP | A/G | rs2499970 (DbSNP) | |
| 11 | 5,058,988 | 5,058,988 | SNP | A/T | rs12420187 (DbSNP) | |
| 11 | 5,058,664 | 5,058,664 | SNP | C/G | rs2445269 (DbSNP) | |
| 11 | 5,059,136 | 5,059,136 | SNP | C/T | rs2445272 (DbSNP) | |
| 11 | 5,058,517 | 5,058,517 | SNP | C/T | rs2445268 (DbSNP) | |
| 11 | 5,058,341 | 5,058,341 | SNP | C/T | rs1463373 (DbSNP) | |
| 11 | 5,058,390 | 5,058,390 | SNP | C/T | rs1463374 (DbSNP) | |
| 11 | 5,058,779 | 5,058,779 | SNP | C/T | rs11035278 (DbSNP) | |
| 11 | 5,058,271 | 5,058,271 | SNP | C/T | rs1463372 (DbSNP) | |
| 11 | 5,059,044 | 5,059,044 | SNP | C/T | rs72860163 (DbSNP) | |
| 11 | 5,059,064 | 5,059,064 | SNP | G/T | rs2445271 (DbSNP) | |
| 11 | 5,058,696 | 5,058,696 | SNP | G/T | rs2445270 (DbSNP) | |
| 11 | 5,037,041 | 5,037,041 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 5,037,111 | 5,037,111 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,037,160 | 5,037,160 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,037,287 | 5,037,287 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,037,386 | 5,037,386 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,037,434 | 5,037,434 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,037,466 | 5,037,466 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,037,549 | 5,037,549 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,037,739 | 5,037,739 | SNP | T/C | 1000GP (CEU) | |
| 11 | 5,037,758 | 5,037,758 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 11 | 5,037,814 | 5,037,814 | SNP | C/T | 1000GP (CEU) | |
| 11 | 5,037,834 | 5,037,834 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,037,906 | 5,037,906 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,037,436 | 5,037,436 | SNP | C/T | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 4,907,893 | 5,135,331 | CopyNumber | Variation_3835 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.