OR52L2P Olfactory Receptor
| Gene Symbol | OR52L2P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | L |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-74, HsOR11.3.96 |
| External Ids | HGNC: 14788 GeneBank: AB065820, BK004254, NG_003195, S65372 |
| Build #39 labels | OR52L2 |
| Chromosomal location | 11:6,057,289-6,058,230 (-) |
| Cluster | 11@6 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52L1 | 91.4% | 314 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52L1 | 84% | 314 |
| Dog | OR52L2 | 84% | 314 |
| Mouse | Or52l1 | 86% | 313 |
| Rat | Or52l1 | 86% | 313 |
| Rat | Or52l1b | 86% | 313 |
| Cow | OR52L2 | 86% | 312 |
| Cow | OR52L1 | 86% | 312 |
| Orang | OR52L2 | 95% | 314 |
| Orang | OR52L1 | 92% | 314 |
| Horse | OR52L2 | 88% | 310 |
| Chimp | OR52L1 | 93% | 314 |
Sequence information
| Nucleotide sequence |
ATGGCGCTTAGCAATTCCAGCTGGAGGCTACCCCAGCCTTCTTTTTTCCTGGTAGGAATT CCGGGTTTAGAGGAAAGCCAGCACTGGATCGCACTGCCCCTGGGCATCCTTTACCTCCTT GCTCTAGTGGGCAATGTTACCATTCTCTTCATCATCTGGATGGACCCATCCTTGCACCAA CCTATGTACCTCTTCCTGTCCATGCTAGCTGCCATCGACCTGGTTGTGGCCTCCTCCACT GCACCCAAAGCCCTTGCAGTGCTCCTGGTTCGTGCCCAAGAGATTGGTTACACTGTCTGC CTGATCCAGATGTTCTTCACCCATGCATTCTCCTCCATGGAGTCAGGGGTACTTGTGGCC ATGGCTCTGGATCGCTATGTAGCCATTTGTCACCCCTTGCACCATTCCACGATCCTGCAT CCAGGGGTCATAGGGCACATCGGAATGGTGGTGCTGGTGCGGGGATTACTACTCCTCATC CCCTTCCTCATTCTGTTGCGAAAACTTATCTTCTGCCAAGCCACCATCATAGGCCATGCC TATTGTGAACATATGGCTGTTGTGAAACTTGCCTGCTCAGAAACCACAGTCAATCGAGCT TATGGGCTGACTGTGGCCTTGCTTGTGGTTGGGCTGGATGTCCTGGCCATTGGTGTTTCC TATGCCCACATTCTCCAGGCAGTGCTGAAGGTACCAGGAAATGAGGCCCGACTTAAGGCG TTTAGCACATGTGGCTCTCATGTTTGTGTCATCCTGGTCTTCTATATCCCGGGAATGTTC TCCTTCCTCACTCACCGCTTTGGTCATCATGTACCCCATCACGTCCATGTTCTTCTGGCC ATACTGTATCGCCTTGTGCCACCTGCACTCAATCCTCTTGTCTATGGGGTGAAGACCCAG AAGATCCACCAGTGAGTGCTCAGGGTGTTTACACTAAAGGAT |
| Conceptual translation |
MALSNSSWRLPQPSFFLVGIPGLEESQHWIALPLGILYLLALVGNVTILFIIWMDPSLHQ PMYLFLSMLAAIDLVVASSTAPKALAVLLVRAQEIGYTVCLIQMFFTHAFSSMESGVLVA MALDRYVAICHPLHHSTILHPGVIGHIGMVVLVRGLLLLIPFLILLRKLIFCQATIIGHA YCEHMAVVKLACSETTVNRAYGLTVALLVVGLDVLAIGVSYAHILQAVLKVPGNEARLKA FSTCGSHVCVILVFYIPGMFSFLTHRFGHHVPHHVHVLLAILYRLVPPALNPLVYGVKTQ KIHQXLRVFTLKD Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 6,079,001 | 6,079,001 | SNP | A/G | rs4448669 (DbSNP) | |
| 11 | 6,078,611 | 6,078,611 | SNP | A/G | rs55876254 (DbSNP) | |
| 11 | 6,078,724 | 6,078,724 | SNP | A/G | rs73406099 (DbSNP) | |
| 11 | 6,078,741 | 6,078,741 | SNP | C/G | rs61733539 (DbSNP) | |
| 11 | 6,078,961 | 6,078,961 | SNP | C/T | rs58557691 (DbSNP) | |
| 11 | 6,079,028 | 6,079,028 | SNP | C/T | rs61735897 (DbSNP) | |
| 11 | 6,078,940 | 6,078,940 | SNP | G/A | rs61735879 (DbSNP) | |
| 11 | 6,079,244 | 6,079,244 | SNP | T/C | rs55742886 (DbSNP) | |
| 11 | 6,078,575 | 6,078,575 | SNP | T/C | rs61739062 (DbSNP) | |
| 11 | 6,079,050 | 6,079,050 | SNP | T/C | rs61739999 (DbSNP) | |
| 11 | 6,079,455 | 6,079,455 | SNP | T/C | rs61729696 (DbSNP) | |
| 11 | 6,057,345 | 6,057,345 | SNP | C/T | 1000GP (CEU) | |
| 11 | 6,057,771 | 6,057,771 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 6,057,798 | 6,057,798 | SNP | C/T | 1000GP (CEU) | |
| 11 | 6,057,954 | 6,057,954 | SNP | G/A | 1000GP (CEU) | |
| 11 | 6,058,194 | 6,058,194 | SNP | G/C | 1000GP (CEU) | |
| 11 | 6,058,225 | 6,058,225 | SNP | C/T | 1000GP (CEU) | |
| 11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 5,505,764 | 6,194,475 | CopyNumber | Variation_34458 (DGV) |
| 11 | 6,076,999 | 6,117,545 | CopyNumber | Variation_71268 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.