OR52M2P Olfactory Receptor
| Gene Symbol | OR52M2P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | M |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-5, HsOR11.3.9P, ORL3552 |
| External Ids | HGNC: 15226 GeneBank: BK004611, NG_004305 ORDB: ORL3552 |
| Build #39 labels | OR52M2P, OR52M4 |
| Chromosomal location | 11:4,514,945-4,515,924 (-) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52M1 | 78.12% | 320 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52M2 | 84% | 328 |
| Dog | OR52M1 | 81% | 328 |
| Mouse | Or52m2 | 84% | 328 |
| Rat | Or52m2 | 84% | 328 |
| Cow | OR52M2 | 82% | 328 |
| Orang | OR52M2 | 94% | 275 |
| Horse | OR52M2 | 84% | 328 |
| Horse | OR52M1 | 81% | 328 |
| Chimp | OR52M1 | 78% | 320 |
Sequence information
| Nucleotide sequence |
ATGTTAACCCCTAATAATGCCTGCTCCGTGCCTACCTCTTTCCGGCTCACTGGCATCCCT GGCCTGGAATCCCTGCACATCTGGCTCTCCATCCCCTTTGGCTCCATGTACCTGGTAGCT GTGCTGGGGAACATAACCATCCTGGCAGTGGTAAGGATGGAGTACAGCCTGCATCAGCCC ATGTACTTCTTCCTGTGCATGTTGGCTGTCATTGACTTGGTCCTGTCAACCTCTACCATG CCCAAACTACTGGCCATCTTCTGGTTTGGTGCCCACAACATTGGTGTTAATGCCTGTTTG GCCCAGATGTTCTTCATTCATTGCTTTGCCACTGTTGAGTCAGGCATCTTCCTTGCCATG GCTTTTGATCACTATGTGGCCATCTGTGACCCACTGCATCATACCTTGTTGCTCACCCAT GCTGTGGTGGGTCGTTTGGGGCTGGCTGCCCTCCTCCGGGGGGTAATCTACATTGGACCT CTGCCCCTAGTGATTTGTCTGAGGTTGCCCCTTTACCACACCCAAATCATTGCCCATTCG TACTGTGAGCACATGGCTGTGGTCACCTTGGCATGTGGTGTGACACAAGGGTCAACAACT TATATGGAATGGGGATTGGCTTTCTGGTATTAATCCTGGATTCATTGGCCATCACTGCCT CCTATGTGATGATTTTCAGGGCTGTAATGGGCTTGGCCACCTCTGAAGCCAGGCTTAAAA CCTTAGGGACATGTGGCTCTCACATCTGTGCCATCCTCGTCTTCTACATCCCCATTGCTG TTTCCTCTCTCACACACCGCTTTGGCCATCGTGTGCCTCCCCATATCCATATCCATATCC ATATCCATATCCATATCCATATCCTTTTGGCCAACATTTACCTCCTCATCCCACCTATCC TCAACCCAATAGTCTATGCTGTCCGCACAAAGCAGATCCGAGAGGCTCTTCTCCATATTA AGGCAAGGACTCAAACCAGG |
| Conceptual translation |
MLTPNNACSVPTSFRLTGIPGLESLHIWLSIPFGSMYLVAVLGNITILAVVRMEYSLHQP MYFFLCMLAVIDLVLSTSTMPKLLAIFWFGAHNIGVNACLAQMFFIHCFATVESGIFLAM AFDHYVAICDPLHHTLLLTHAVVGRLGLAALLRGVIYIGPLPLVICLRLPLYHTQIIAHS YCEHMAVVTLACG/DTRVNNLYGMGIGFLVLILDSLAITASYVMIFRAVMGLATSEARL KTLGTCGSHICAILVFYIPIAVSSLTHRFGHRVPPHIHIHIHIHIHIHILLANIYLLIPP ILNPIVYAVRTKQIREALLHIKARTQTR Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 4,536,335 | 4,536,334 | Ins(6) | -/ATATGG | rs71050410 (DbSNP) | |
| 11 | 4,536,291 | 4,536,290 | Ins(6) | -/GGATAT | rs71466175 (DbSNP) | |
| 11 | 4,536,362 | 4,536,362 | SNP | A/G | rs56389610 (DbSNP) | |
| 11 | 4,537,019 | 4,537,019 | SNP | A/T | rs16906358 (DbSNP) | |
| 11 | 4,536,717 | 4,536,717 | SNP | C/T | rs4910989 (DbSNP) | |
| 11 | 4,536,665 | 4,536,665 | SNP | C/T | rs2709157 (DbSNP) | |
| 11 | 4,536,320 | 4,536,320 | SNP | G/T | rs73437894 (DbSNP) | |
| 11 | 4,536,389 | 4,536,389 | SNP | G/T | rs12802383 (DbSNP) | |
| 11 | 4,536,230 | 4,536,230 | SNP | T/C | rs2566221 (DbSNP) | |
| 11 | 4,536,613 | 4,536,613 | SNP | T/C | rs2566220 (DbSNP) | |
| 11 | 4,515,000 | 4,515,000 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 4,515,383 | 4,515,383 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 4,515,435 | 4,515,435 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 4,515,680 | 4,515,680 | SNP | T/C | 1000GP (CEU) | |
| 11 | 4,515,789 | 4,515,789 | SNP | T/A | 1000GP (CEU) | |
| 11 | 4,515,122 | 4,515,122 | SNP | A/T | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 4,510,285 | 4,562,458 | CopyNumber | Variation_2899 (DGV) |
| 11 | 4,510,284 | 4,562,394 | CopyNumber | Variation_9172 (DGV) |
| 11 | 4,535,321 | 4,578,714 | CopyNumber | Variation_9173 (DGV) |
| 11 | 4,510,137 | 4,562,393 | CopyNumber | Variation_38231 (DGV) |
| 11 | 4,534,175 | 4,537,254 | Deletion | #196 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.