OR52N3P Olfactory Receptor
| Gene Symbol | OR52N3P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | N |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-60, HsOR11.3.82P, ORL3522 |
| External Ids | HGNC: 15229 GeneBank: BK004567, NG_004221 ORDB: ORL3522 |
| Build #39 labels | OR52N3P |
| Chromosomal location | 11:5,800,364-5,801,321 (+) |
| Cluster | 11@6 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52N2 | 75.16% | 314 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52N3 | 86% | 320 |
| Mouse | Or52n3 | 81% | 314 |
| Rat | Or52n3 | 81% | 316 |
| Cow | OR52N2G | 77% | 318 |
| Orang | OR52N2P | 76% | 315 |
| Horse | OR52N4 | 68% | 314 |
| Chimp | OR52N2 | 76% | 314 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | DN831986 |
Sequence information
| Nucleotide sequence |
ATGAATGGAGCCAACAGCTCCAGCCTGACACCAAGATATTTCATTCTCAGTGGCGTTCCT GGGCTGGAAGCTGCACACATCTGGATCTCCCTGCCTTTCTGCTTCATGTACATCATTGTT GTTTTGGGGAACTGTGGACTTATATACCTCATTAGCCATGAGGAGGCCCTGCACCAACCC ACCTACTACTTCCTAGACTTGCTGTCTCTTACAGATGTTACTGGATGCACCTCATTTGTT CCCAATATGTTATGTATTTTTTGGTTTGGCCTCAAGGAAATTGACTTTAATGCCTGCCTT GTGCAGATGTTTTTCATCCACATGCTGACAGGCATGGAGTCTGGGGCGCTCATGCTTATG GCTCTAGACCGCTATGTGGCCATTTGCTACCCTCTACACTATTCCACCATCTTCACCAAC ACTGTAATTACCAAAGTTGGGCTTGTCACCTTCATTCAAAGTGTGTTGCTTATGATTCCA TTTGCTTTCCTGATCAAGTGTCTTCCCTATTGCAGGGGCAACCTCATCCACCACACCTAT TTTAACATATGTCTGTGGCCAAATTATCCTGTGGTAATGTCCAGATTAATGCCATCTATG GTCTCATAGCTGCCATATTGATTGGGGGGTTTGACATGTTCTGTATCTCCATGTCTTACA CCATGATTATCCGTGCTGTAGTGAATTTGTCATCTGCAGATGCTGCCACAAAGCCTTCAG TACCTGTACAGCACATATATGTGCTATTTTCATCACTTATGTCCCAGCCTTTTTCAACTT CTTCACTCACCGCTTTGGGGGACACACCATACCTCATCATGTTCACATTTTTATAGCCAA CCTTTACCTGATGCTGCCTCCCACCTTAAATCCAATTGTCTATGGAGTGAAGACCAAGCA GATCCGTGAAGGAGTGATCAAATTGTTTTTTAGAGAGAAAGGTATTTTAAGTATGACA |
| Conceptual translation |
MNGANSSSLTPRYFILSGVPGLEAAHIWISLPFCFMYIIVVLGNCGLIYLISHEEALHQP TYYFLDLLSLTDVTGCTSFVPNMLCIFWFGLKEIDFNACLVQMFFIHMLTGMESGALMLM ALDRYVAICYPLHYSTIFTNTVITKVGLVTFIQSVLLMIPFAFLIKCLPYCRGNLIHHTY /XMSVAKLSCGNVQINAIYGLIAAILIGGFDMFCISMSYTMIIRAVVNLSS/RCCHK AFSTCTAHICAIFITYVPAFFNFFTHRFGGHTIPHHVHIFIANLYLMLPPTLNPIVYGVK TKQIREGVIKLFFREKGILSMT Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 5,821,699 | 5,821,699 | SNP | A/C | rs7940926 (DbSNP) | |
| 11 | 5,821,745 | 5,821,745 | SNP | A/T | rs73392251 (DbSNP) | |
| 11 | 5,800,469 | 5,800,469 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,801,012 | 5,801,012 | SNP | C/T | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | A/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 5,776,623 | 5,842,356 | CopyNumber | Variation_2902 (DGV) |
| 11 | 5,730,377 | 5,970,717 | CopyNumber | Variation_3836 (DGV) |
| 11 | 5,505,764 | 6,194,475 | CopyNumber | Variation_34458 (DGV) |
| CopyNumber | 223 (Hasin) | |||
| 11 | 5,821,494 | 5,824,551 | CopyNumber | #63 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.