OR52P2P Olfactory Receptor
| Gene Symbol | OR52P2P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | P |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.3.5P, ORL3568 |
| External Ids | HGNC: 15233 GeneBank: AB065856, NG_004282 ORDB: ORL3568 |
| Build #39 labels | OR52P2P |
| Chromosomal location | 11:4,431,333-4,432,229 (-) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks | Coding for partial protein |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52D1 | 53.72% | 296 |
| OR52K2 | 57.24% | 290 |
| OR52P1P | 58.45% | 296 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52P2 | 93% | 299 |
| Mouse | Or52p2 | 94% | 299 |
| Rat | Or52p2 | 94% | 299 |
| Cow | OR52P2 | 92% | 299 |
| Orang | OR52P2 | 93% | 299 |
| Horse | OR52P2 | 91% | 299 |
| Chimp | OR52P2 | 99% | 299 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | BI023089 |
| GNF Atlas2 | gnf1h05798_at |
Sequence information
| Nucleotide sequence |
ATGGGAATTCCAGGCCCGGAGGCATCCCACTTTTGGATTGCTTTTCCCTTCTGCTCCATG TATGCCCTGGCAGTGCTGGGAAACATGGTGGTGCTGCTAGTGGTACATTCAGAGCCTGTA TTGCACCAGCCCATGTACCTGTTCCTCTGCATGCTATCCACCATTGACCTGGTCCTCTGC ACCTCCACTGTGCCCAAGCTCCTTGCACTTTTTTGGGCAAAGGATGCTGAGATCAACTTT GGGGCCTGTGCTGCCCAGATGTTCTTTATCCATGGCTTCTCAGCTGTAGAATCTGGTATA CTGCTAGCAATGGCCTTTGACCGCTACTTAGCCATTTGCTGGCCTCTGCACTATGGGTCA TTGCTCTCCCCAGAGTCTGTAGGCAAGCTGGGGGCTGCAGCCGTGCTTCGTGGTTTGGGA CTCATGACCCCACTCACCTGCTTACTGGCAAGACTGAGCTACTGCAGTCGAGTGGTGGCC CACTCCTACTGTGAACACATGGCTGTGGTAAAGCTGGCTTGTGGAGGAACACAGCCAAAC AACATCTATGGCATCACTGCTGCCACACTGGTGGTGGGCACTGACTCCATCTGTATTGCT GTCTCCTATGCACTCATCCTCCGAGCTGTGTTAGGTCTTTCCTCCAAGGAGGCAAGGGCT AAGACCTTTGGCACTTGTGGCTCCCACCTGGGTGTCATACTTCTCTTCTACACACCAGGA CTCTTCTCCTTCTACACACAGCGGTTTGGCCAGCACGTGCCCCGGCACATCCACATCCTT CTAGCTGACCTCTACCTGGTTGTGCCACCCATGCTCAACCCCATCATCTATGGCATGAAG ACCAAACAGATCTGGGATGGGGCCCTCCGGCTTCTGAAGTGGGGCCCTGCTCAGTCA |
| Conceptual translation |
MGIPGPEASHFWIAFPFCSMYALAVLGNMVVLLVVHSEPVLHQPMYLFLCMLSTIDLVLC TSTVPKLLALFWAKDAEINFGACAAQMFFIHGFSAVESGILLAMAFDRYLAICWPLHYGS LLSPESVGKLGAAAVLRGLGLMTPLTCLLARLSYCSRVVAHSYCEHMAVVKLACGGTQPN NIYGITAATLVVGTDSICIAVSYALILRAVLGLSSKEARAKTFGTCGSHLGVILLFYTPG LFSFYTQRFGQHVPRHIHILLADLYLVVPPMLNPIIYGMKTKQIWDGALRLLKWGPAQS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 4,452,824 | 4,452,824 | SNP | A/G | rs7122384 (DbSNP) | |
| 11 | 4,452,865 | 4,452,865 | SNP | A/T | rs11605909 (DbSNP) | |
| 11 | 4,452,576 | 4,452,576 | SNP | C/T | rs7106422 (DbSNP) | |
| 11 | 4,453,137 | 4,453,137 | SNP | C/T | rs73422022 (DbSNP) | |
| 11 | 4,453,050 | 4,453,050 | SNP | C/T | rs11603357 (DbSNP) | |
| 11 | 4,452,924 | 4,452,924 | SNP | G/A | rs61753393 (DbSNP) | |
| 11 | 4,453,394 | 4,453,394 | SNP | G/A | rs61998189 (DbSNP) | |
| 11 | 4,453,224 | 4,453,224 | SNP | T/G | rs61733340 (DbSNP) | |
| 11 | 4,431,346 | 4,431,346 | SNP | C/T | 1000GP (CEU) | |
| 11 | 4,431,594 | 4,431,594 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 4,431,635 | 4,431,635 | SNP | T/A | 1000GP (CEU) | |
| 11 | 4,431,820 | 4,431,820 | SNP | C/T | 1000GP (CEU) | |
| 11 | 4,431,985 | 4,431,985 | SNP | G/T | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 4,333,543 | 4,474,341 | CopyNumber | Variation_2164 (DGV) |
| 11 | 4,055,945 | 4,510,188 | CopyNumber | Variation_3834 (DGV) |
| CopyNumber | 83 (Hasin) | |||
| 11 | 4,450,563 | 4,453,559 | CopyNumber | #51 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.