OR52S1P Olfactory Receptor
| Gene Symbol | OR52S1P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | S |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.3.46P, ORL3505 |
| External Ids | HGNC: 14805 GeneBank: AF546588-AF546601, NG_002262 ORDB: ORL3505 |
| Build #39 labels | OR52S1P |
| Chromosomal location | 11:5,076,094-5,077,066 (-) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52D1 | 57.65% | 307 |
| OR52K1 | 54.43% | 305 |
| OR52K2 | 55.02% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52S1 | 88% | 316 |
| Mouse | Or52s1 | 86% | 313 |
| Mouse | Or52s1b | 83% | 313 |
| Rat | Or52s1 | 85% | 313 |
| Rat | Or52s1b | 83% | 313 |
| Cow | OR52S2 | 74% | 307 |
| Orang | OR52S28 | 73% | 307 |
| Horse | OR52S1 | 85% | 316 |
| Chimp | OR52D1 | 56% | 315 |
Sequence information
| Nucleotide sequence |
ATGTCAGCATACAATAACACCAATGCCCGTCCATCAACCTTTATTCTTATTGGCATTCCT GGGTTGGAAGCTGCTCACATCTGGATCTCCATCCCCTTTTGTGTGGTCTACCTGTTGGCC CTACTGGGAAACGGCTCTCTTCTGTTTATCATCAAGACAGAGCCCAGCCTCCATGAGCCA ATGTACCTCTTCCTATGCATGCTGGCTGTAGTTGATCTTGTTGTGTGTTCTACAGCTGTG CCCAAACTTCTCAGTCTCTTCTGGTTCCATGATGGAGAGATTCGCTTTGAAACCTGCCTC ACTCGTGTTCCTGATTCACTCTTGCTCCACCATGGAATCTGGCTTCTTCCTGGCCATGGC TTTTGACCGATATGTGGCCATTTGCAATCCATTAAGACATTCAGCTATTCTGACACGCGC TGTAATTGGGAGAGTGGGCCTAGCTATTGTTCTCAGGGGCATAGCACTTCTCAGTCCTCA CTCTTTCCTACTACACTGGCTTCCCTACTGCAGAACCCATATCATTTCTCACACCTACTG TGAGTTCATGGCCCTCATCAGGATTGCCTGTGCTGAGACAAAATTCCGCAGAGCCTACAG CCTCATTGTTGCCTTCCTTACTGGGGTGGTAGACTTTATATTGATCATTTATTCTTATGT CCTCATACTCCACACTGTCTTCCAGCTCCCATCCAAAGATGCCCGGCTCAAATCTTTGGG CACCTGTGGCTCCCATGTCTGTGTCATCTTAGTATCCTATACTCCAGCCTTCTTCTCGTT TCTCACCCACAGGTTTGGGCACCATGTGGCTCCCCATTTTCACATATTTGTGGCCAACAT CTATCTTCTTGTCCCACCCATGGTGAACCCCATTATCTATGGGGTAAGAACCAAAAGGAT TTGGGACAGGTTCCTTAAAGTTTTCAGTTTTTCAAAGCCTCTAAGTAAATCATTTTTGTT GGTGAGAAATATC |
| Conceptual translation |
MSAYNNTNARPSTFILIGIPGLEAAHIWISIPFCVVYLLALLGNGSLLFIIKTEPSLHEP MYLFLCMLAVVDLVVCSTAVPKLLSLFWFHDGEIRFETCLT//FLIHSCSTMESGFFL AMAFDRYVAICNPLRHSAILTRAVIGRVGLAIVLRGIALLSPHSFLLHWLPYCRTHIISH TYCEFMALIRIACAETKFRRAYSLIVAFLTGVVDFILIIYSYVLILHTVFQLPSKDARLK SLGTCGSHVCVILVSYTPAFFSFLTHRFGHHVAPHFHIFVANIYLLVPPMVNPIIYGVRT KRIWDRFLKVFSFSKPLSKSFLLVRNI Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 5,097,802 | 5,097,802 | SNP | C/T | rs10734476 (DbSNP) | |
| 11 | 5,097,519 | 5,097,519 | SNP | C/T | rs72867688 (DbSNP) | |
| 11 | 5,076,572 | 5,076,572 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,076,573 | 5,076,573 | SNP | G/A | 1000GP (CEU) | |
| 11 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 4,907,893 | 5,135,331 | CopyNumber | Variation_3835 (DGV) |
| 11 | 5,087,292 | 5,125,991 | CopyNumber | Variation_5421 (DGV) |
| CopyNumber | 167 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.