OR52T1P Olfactory Receptor
| Gene Symbol | OR52T1P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | T |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-46, HsOR11.3.73P, ORL3613 |
| External Ids | HGNC: 15236 GeneBank: BK004684, NG_004218 ORDB: ORL3613 |
| Build #39 labels | OR52T1P |
| Chromosomal location | 11:5,566,651-5,567,616 (-) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52H1 | 54.43% | 316 |
| OR52H2P | 54.78% | 314 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52H4 | 64% | 319 |
| Mouse | Or52h7 | 58% | 316 |
| Rat | Or52h7 | 55% | 326 |
| Cow | OR52H7P | 57% | 320 |
| Orang | OR52T1BP | 87% | 305 |
| Horse | OR52H19 | 64% | 319 |
| Chimp | OR52H1 | 55% | 316 |
Sequence information
| Nucleotide sequence |
ATGGCCACATTGAATTTAAGTAGCTTCAATCCAGGACTCTTCATTCTGTTGGGGATCCCA GGGCTGGAGTGGTTCTGCATCTGGATGGGAATTCTCTCCTTTACCAGTTACCTTGTCTCC CTTGTAGGGAATGTCATCCTTCTCTACCTTATCACTGTGGAACACAACCTCCATAAACCC ATGTTTTCCTTCCTCTCTATACCGGCCTCTGCAAACCTCATATTATGCATTACATATTTC CCCAAAACATTTGGGATATTCTAGCTGAAAGCTCAGAAAATAATATTTCCTGGATGCTTC ACCAGGTTTTTTTTTTTTGGTCTACTTCACTTTAGCTTTTTTTCTGGACTTGGCCATCTT GTTGGGTCTGGCATTTGATCATTACATGACCATTGGTTTCCTTCTGAGATACACCAGTGG CTTGACACCTCGACACTTGGCAAGATTGTGGTGAGCATTGATTGAAGGTTTAATAACATT TTGCCCATTGATTTCCTGGGGAAGCATTTGCCCTTCTGCAGAACACACATTAATTCTAAC ACATACTGTGAGCACATAGGTGTGGCCCTGCTTTCCTATGCTGATATCTCCATCAATATC TGGTATGACTTTACTATATTGGTAATGACTATTATCTCAGATCTGATCCTCACTGATATT TCCTACACCCTCACCCTTCATGCTGTTTTCCACCTTCCATCCAGTGATGCCCTTCTGAAG GCCCTAAGCACCGGTGGTTCTCATGTCAGTGTCATTCTCATGTTGTACACACCAGCCATG CTTTCTGCCCTTACTCATCACTTTGGCCAGAGTATCTCTTGCACTTTTTACATTATGTTT GTGGGCCTCTATAGGGCAATCCCTCCTGTACTCAATTCCATAATTATGGAGTAAAAACAA AGCAGATTGGAATTATTCTTTCTTAAAGGGATGCAGTGATATGAGGATGAGAATATGGAT AAATGG |
| Conceptual translation |
MATLNLSSFNPGLFILLGIPGLEWFCIWMGILSFTSYLVSLVGNVILLYLITVEHNLHKP MFSFLSIPASANLILCITYFPKTFGIFXKAQKIIFPGCFTRFFFFGLLHFSFF/WT/ AILLGLAFDHYMTIGFLLRYTSGLTPRHL/KIVVSIDXFNNILPIDFLGKHLPFCRTH INSNTYCEHIGVALLSYADISINIWYDFTILVMTIISDLILTDISYTLTLHAVFHLPSSD ALLKALSTGGSHVSVILMLYTPAMLSALTHHFGQSISCTFYIMFVGLYRAIPPVLNSIIM EXQSRLELFFLKGMQXEDENMDKW Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | C/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 11 | 5,566,703 | 5,566,703 | SNP | A/G | 1000GP (CEU) | |
| 11 | 5,566,704 | 5,566,704 | SNP | A/T | 1000GP (CEU) | |
| 11 | 5,566,842 | 5,566,842 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 5,566,884 | 5,566,884 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 11 | 5,566,944 | 5,566,944 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,567,297 | 5,567,297 | SNP | C/A | 1000GP (CHBJPT) | |
| 11 | 5,567,298 | 5,567,298 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 11 | 5,567,455 | 5,567,455 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,567,492 | 5,567,492 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,587,889 | 5,587,889 | SNP | C/G | rs16932981 (DbSNP) | |
| 11 | 5,587,935 | 5,587,934 | Ins(14) | -/AAGTATGACCTTGT | rs6144193 (DbSNP) | |
| 11 | 5,587,936 | 5,587,935 | Ins(14) | -/AAGTATGACCTTGT | rs35154426 (DbSNP) | |
| 11 | 5,588,072 | 5,588,072 | SNP | C/T | rs10769074 (DbSNP) | |
| 11 | 5,588,114 | 5,588,114 | SNP | A/C | rs9804611 (DbSNP) | |
| 11 | 5,588,174 | 5,588,174 | SNP | C/T | rs9804698 (DbSNP) | |
| 11 | 5,588,415 | 5,588,415 | SNP | C/T | rs1433568 (DbSNP) | |
| 11 | 5,588,512 | 5,588,512 | SNP | C/G | rs1433569 (DbSNP) | |
| 11 | 5,588,528 | 5,588,528 | SNP | A/C | rs34148207 (DbSNP) | |
| 11 | 5,588,529 | 5,588,528 | Ins(1) | -/A | rs35177274 (DbSNP) | |
| 11 | 5,588,530 | 5,588,529 | Ins(1) | -/A | rs72416481 (DbSNP) | |
| 11 | 5,588,533 | 5,588,532 | Ins(1) | -/A | rs67704720 (DbSNP) | |
| 11 | 5,588,538 | 5,588,537 | Ins(1) | -/A | rs66740605 (DbSNP) | |
| 11 | 5,588,540 | 5,588,539 | Ins(1) | -/A | rs11451429 (DbSNP) | |
| 11 | 5,588,541 | 5,588,540 | Ins(1) | -/A | rs57589569 (DbSNP) | |
| 11 | 5,588,542 | 5,588,541 | Ins(1) | -/A | rs66742326 (DbSNP) | |
| 11 | 5,588,685 | 5,588,685 | SNP | C/T | rs7927505 (DbSNP) | |
| 11 | 5,588,722 | 5,588,722 | SNP | A/G | rs7924363 (DbSNP) | |
| 11 | 5,588,841 | 5,588,841 | Del(1) | -/G | rs35997399 (DbSNP) | |
| 11 | 5,588,842 | 5,588,842 | Del(1) | -/G | rs10716874 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 5,505,764 | 6,194,475 | CopyNumber | Variation_34458 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.