OR52U1P Olfactory Receptor
| Gene Symbol | OR52U1P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | U |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.3.75P, ORL3528 |
| External Ids | HGNC: 15237 GeneBank: NG_004217 ORDB: ORL3528 |
| Build #39 labels | OR52U1P |
| Chromosomal location | 11:5,719,290-5,720,266 (+) |
| Cluster | 11@6 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52D1 | 50.81% | 309 |
| OR52N2 | 49.35% | 308 |
| OR52N4 | 49.68% | 308 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52U1 | 84% | 323 |
| Dog | OR52U1C | 82% | 323 |
| Dog | OR52U1B | 81% | 323 |
| Mouse | Or52u1 | 85% | 325 |
| Rat | Or52u1 | 86% | 321 |
| Cow | OR52U1 | 83% | 323 |
| Cow | OR52U1DP | 83% | 286 |
| Orang | OR52U1 | 95% | 326 |
| Horse | OR52U1 | 86% | 325 |
| Chimp | OR52P1 | 51% | 312 |
Sequence information
| Nucleotide sequence |
ATGACTGCTTGCAATGCCTCACAGGGCCACCCTTCTTTCTTCATTCTCCAAGGAATTCCT GGCATGGAGGACAAACACAGATGGATATCTATCCCCTTCTCCTCCATGTATTTCGTTATG GTGCTTGGGAACTGCACCATCCTCCTCACCATCTCCACAGAGCGCTCCCTGCACAAACCC ATGTTCCTGCTCCTCTGTCTGTTGGCCCTCACAGACCTGGGCATGTCTACAACCACCATT CCCAAGGTGCTGTGCATTTTCTGGTTTGGCCAGAGTGAGATCAGCTATGAAGGATGCCTG GTTCAGCTGTTCTTCATCCACTCCATCTCTGCCATGCAGTCAGCTGTCCTGATGACCATG GCCTTTGACCACTATGTGGCCATCTGCAAGCCCTTGCGCTATGCCACCATCCTTTCCAAT AGTTGCACTGGACTCATTGGCTTAGTGAGTTTGGTGAGAGCTATCCTCTTTATTCTCCCC ATGCCCATCCTCCTTCAGCAAATGCCCTATCATGCCAATCGTGTCATCCCCACCACCTCC TGTGAGCACATGGCTGTGGTGAAGATGGTTTGTGTAGATACTACAGTCAACAGGATATAT GGCCTGGTGGTGGCCTTGTTGGTTGCTGGCTGGATCTCTCAGCTATTGCTTCATCTTATG TGCTAATCATCCAGGCTATAATGCATCTCTCTTCTAAGGAAGCCCACCACAAAGCAGTCA ACACCTGCACCACACACATCTGTGTCATGCTTATTTCTTATACTCCCTCACTTTTCTCTT TTCTCGCTCACCGCTTTGGCCAAGGCATTCCACCCCATGTCCACATCATTCTTGGCAACC TTTACTTCCTTGTACCTCCAATGCTCAGTCCTATAATTTATGGAGTGAAAACTAAGGAGT TCTGGGACAAAGTGACCAAATAGGGTTGCTGGAAAGAAGAACCCACAACCACTGACCATG GTCAGAAACTTGTCTGG |
| Conceptual translation |
MTACNASQGHPSFFILQGIPGMEDKHRWISIPFSSMYFVMVLGNCTILLTISTERSLHKP MFLLLCLLALTDLGMSTTTIPKVLCIFWFGQSEISYEGCLVQLFFIHSISAMQSAVLMTM AFDHYVAICKPLRYATILSNSCTGLIGLVSLVRAILFILPMPILLQQMPYHANRVIPTTS CEHMAVVKMVCVDTTVNRIYGLVVALLV/WLDLSAIASSYVLIIQAIMHLSSKEAHHKA VNTCTTHICVMLISYTPSLFSFLAHRFGQGIPPHVHIILGNLYFLVPPMLSPIIYGVKTK EFWDKVTKXCWKEEPTTTDHGQKLVW Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 5,740,971 | 5,740,971 | Del(1) | -/T | rs34289607 (DbSNP) | |
| 11 | 5,741,204 | 5,741,204 | SNP | A/G | rs34279421 (DbSNP) | |
| 11 | 5,741,102 | 5,741,102 | SNP | A/G | rs12281165 (DbSNP) | |
| 11 | 5,741,151 | 5,741,151 | SNP | A/G | rs10769200 (DbSNP) | |
| 11 | 5,740,634 | 5,740,634 | SNP | A/G | rs12285602 (DbSNP) | |
| 11 | 5,740,683 | 5,740,683 | SNP | C/G | rs73404276 (DbSNP) | |
| 11 | 5,741,117 | 5,741,117 | SNP | C/T | rs35378018 (DbSNP) | |
| 11 | 5,719,404 | 5,719,404 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 5,719,887 | 5,719,887 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,719,921 | 5,719,921 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 5,719,974 | 5,719,974 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,719,872 | 5,719,872 | SNP | A/G | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 5,730,377 | 5,970,717 | CopyNumber | Variation_3836 (DGV) |
| 11 | 5,505,764 | 6,194,475 | CopyNumber | Variation_34458 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.