OR52V1P Olfactory Receptor
| Gene Symbol | OR52V1P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | V |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-44, HsOR11.3.69P, ORL3612 |
| External Ids | HGNC: 15238 GeneBank: BK004732, NG_004216 ORDB: ORL3612 |
| Build #39 labels | OR52V1P |
| Chromosomal location | 11:5,527,223-5,528,126 (-) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52B2 | 45.45% | 286 |
| OR52B6 | 43.48% | 299 |
| OR52D1 | 46.49% | 299 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52V2 | 74% | 286 |
| Mouse | Or52z1 | 46% | 286 |
| Rat | Or52z1 | 46% | 286 |
| Cow | OR52V2P | 65% | 294 |
| Orang | OR52V1BP | 88% | 260 |
| Horse | OR52V4 | 72% | 286 |
| Chimp | OR52D1 | 46% | 299 |
Sequence information
| Nucleotide sequence |
ATGCCGGGACTGGAGGCTCTGCATGCCTGGCTCTCTGTGCTTGTGTGCCTGCTCTACATG GCAGCTTTGGTAGGGAATGCCCTTCTAGTGGGGCTGGTGGTCACTGACAAGGCACTCTGG GCACCCATGTACCAGCTGCTGTGGCTTCTGGCAGCTGCTGATTTTGTTCTGGCCACATCC ACAGTGCCCAAAGCTCTGGCTGTACTTTGGGGCTTGTCTAGTGAGATATCATTTGGAGGC TGCTTGGCTCAACTCTTTGTTGCCCATGTGTCAATCATTGCCACATTGCTGAGTCCTCAG TGCTGCTGTCCACGGCCGTAGACTGCCAGCCTTTGCGCTATGGGGCGTTGCTGGCCCAGT TTGTGGTAGGTCTAGTGGCTCTGACTACCATGACCCGTGATGTCTGTGTCATGTACACCC TGTGATCCTGTTCAAGAAACTGCCTTACTGTGGACAGTGGGCCCTGCCCCACACCTACTG CGAACACATGGGTGTGGCTTGCCTGGCATGTGGAGATACGTGCCCCATCATCAGGTATGG ACTGGCCACCACACTGCTCTCCCCAGCCCTGGACCTAGGGCTCATAGGTGCTTCCTATGC CCTCATTTTCCGTGCTGTCTGCCGTCTGCCATCCCATGTTGCCTGCCACAAGGCTCTGGG TAACTGCGGGACCTATGCTAGCATCATTGGTCTCTTCTACACACCTGCCCTCTTCTCCTT CCTTGCTCACTGTTTTGGGTGTCACACAGTGCCCAACCATATTCACATCCTACTGGCTAA CCTCTACGCAGTGGTGTTCCCAGCTTTCAATCCTGTGGTCTATGGAGTGCAGACTCAGCA GAGCTCAGAGGCTCAGGAACTTGCTTCAACTTTTCTGGGCAGGAGCAGTGAAGAAGGTTG GCCC |
| Conceptual translation |
MPGLEALHAWLSVLVCLLYMAALVGNALLVGLVVTDKALWAPMYQLLWLLAAADFVLATS TVPKALAVLWGLSSEISFGGCLAQLFVAHVSIIATLLSPQCCC/TAVDCQPLRYGALLA QFVVGLVALTTMTRDVCVMYT/VILFKKLPYCGQWALPHTYCEHMGVACLACGDTCPII RYGLATTLLSPALDLGLIGASYALIFRAVCRLPSHVACHKALGNCGTYASIIGLFYTPAL FSFLAHCFGCHTVPNHIHILLANLYAVVFPAFNPVVYGVQTQQSSEAQELASTFLGRSSE EGWP Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 11 | 5,527,594 | 5,527,594 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 11 | 5,527,669 | 5,527,669 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,527,736 | 5,527,736 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,527,743 | 5,527,743 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,528,024 | 5,528,024 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 5,528,046 | 5,528,046 | SNP | G/A | 1000GP (CEU) | |
| 11 | 5,528,086 | 5,528,086 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 5,548,824 | 5,548,824 | SNP | A/T | rs12364340 (DbSNP) | |
| 11 | 5,548,899 | 5,548,899 | SNP | A/G | rs10838265 (DbSNP) | |
| 11 | 5,548,973 | 5,548,973 | SNP | C/T | rs61892124 (DbSNP) | |
| 11 | 5,549,254 | 5,549,254 | SNP | T/C | rs1498480 (DbSNP) | |
| 11 | 5,549,316 | 5,549,316 | SNP | G/A | rs1846317 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 5,505,764 | 6,194,475 | CopyNumber | Variation_34458 (DGV) |
| 11 | 5,546,453 | 5,549,456 | CopyNumber | #123 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.