OR52X1P Olfactory Receptor
| Gene Symbol | OR52X1P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | X |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-73, HsOR11.3.97P, ORL3494 |
| External Ids | HGNC: 14790 GeneBank: BK004556, NG_002220 ORDB: ORL3494 |
| Build #39 labels | OR52X1P |
| Chromosomal location | 11:6,066,846-6,067,792 (-) |
| Cluster | 11@6 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52K1 | 47.91% | 311 |
| OR52N4 | 47.88% | 307 |
| OR52S1P | 48.04% | 306 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52X1 | 86% | 314 |
| Mouse | Or52x1 | 82% | 315 |
| Rat | Or52x1 | 82% | 313 |
| Cow | OR52S6 | 51% | 313 |
| Orang | OR52S6 | 50% | 314 |
| Horse | OR52X1 | 82% | 300 |
| Chimp | OR52P2 | 49% | 311 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | BE148368 |
Sequence information
| Nucleotide sequence |
TTTTTTTCCAATAATTCTGTTCTCTTCCCACATACTTTCTTCCTGGCTGGCATCCCAGGA TTGACTGCCACCCACATTTGGATCTCACTTCCCTTTTGCTTTATGTTTTTCCTGTCATTG ACTGGGAATGGTGTCCTGCTTTTTCTCATCCGGACAGAATGCAGCCTTCGCCAGCCCATG TTTCTTTTTCTTGCCATGCTCTCCTTTGTCGACTTGGTCCTCTCTCTCTCCACACTGCCT AAGATGCTGGCCATTTTCTGGTTTGGTGCTACAGCCATCAGCTCGCATTCCTGTCTTTCC CAGATGTTCTCCATCCATGCATTCTCTGCCATGGAGTCAGGGGTGCTAGTGGCCATGGCC CTGGACCGCTCTGTGGCCATCTGCAACCCACTGCGTTATGCAACCATCCTTCCACCTGTT GTTGTTGCCAAGATTGGAGGCCTGGTGGTGTTGTGAGGGGTGGGATTGACCATCTCCTTT CCAAGCTTGGCCCATAGGCTGCACTACCATGGCTCACACATGATTGCCTATACCTTCTGT GAGCATATGGCAGTGGTGAAGCTTGCCTGTGAGGCCACCACTGTGGACAACCTCTATGCC TTTGTGGTGGCAATCTTTCTTGGTGGGGGGGATGTGGTCTTATTGCCTATTCTTATGGGC TGATTGTGAGGACTGTAATGCATTTTCCTTCACCTGAGGAACGTGCGAAAGCAGGCAGCA CATGTACAGCCCATGTCTGTGTCATCCTCTTCTTCTATGGACTGGGCTTTCTTTCTGTGG TCATGCAGCGCTTTGGAGCACCCACAGCTTCTACTGCCAAGGTCATCCTTGCCAATCTCT ACTTGCTCTTTCCCCCAGCACTGGATCCCATTGTCTATGGCATGGAGACCAAGCAGATCT AGGAGCGGCTATTGATGATTCTAAGCCCCAAGCAGATTGAGCTTACC |
| Conceptual translation |
FFSNNSVLFPHTFFLAGIPGLTATHIWISLPFCFMFFLSLTGNGVLLFLIRTECSLRQPM FLFLAMLSFVDLVLSLSTLPKMLAIFWFGATAISSHSCLSQMFSIHAFSAMESGVLVAMA LDRSVAICNPLRYATILPPVVVAKIGGLVVLXVGLTISFPSLAHRLHYHGSHMIAYTFC EHMAVVKLACEATTVDNLYAFVVAIFLGGGDVV/IAYSYGLIVRTVMHFPSPEERAKAG STCTAHVCVILFFYGLGFLSVVMQRFGAPTASTAKVILANLYLLFPPALDPIVYGMETKQ IXRLLMILSPKQIELT Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 6,088,398 | 6,088,398 | SNP | A/C | rs10839353 (DbSNP) | |
| 11 | 6,088,712 | 6,088,712 | SNP | A/G | rs7930953 (DbSNP) | |
| 11 | 6,088,784 | 6,088,784 | SNP | A/G | rs35702002 (DbSNP) | |
| 11 | 6,088,824 | 6,088,824 | SNP | A/G | rs7931072 (DbSNP) | |
| 11 | 6,088,738 | 6,088,738 | SNP | C/T | rs59722231 (DbSNP) | |
| 11 | 6,088,112 | 6,088,112 | SNP | C/T | rs7948696 (DbSNP) | |
| 11 | 6,066,882 | 6,066,882 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 6,067,168 | 6,067,168 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 11 | 6,067,482 | 6,067,482 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 6,067,508 | 6,067,508 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 6,067,594 | 6,067,594 | SNP | G/A | 1000GP (CEU) | |
| 11 | 6,067,203 | 6,067,203 | SNP | T/C | 1000GP (CHBJPT) | |
| 11 | 6,067,641 | 6,067,641 | SNP | C/T | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 5,505,764 | 6,194,475 | CopyNumber | Variation_34458 (DGV) |
| 11 | 6,076,999 | 6,117,545 | CopyNumber | Variation_71268 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.