OR52Y1P Olfactory Receptor
| Gene Symbol | OR52Y1P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | Y |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | ORL3534 |
| External Ids | HGNC: 15240 GeneBank: NG_004215 ORDB: ORL3534 |
| Build #39 labels | OR52Y1P, OR52Y2P |
| Chromosomal location | 11:4,793,769-4,794,262 (-) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks | Disrupted by LTR repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52R1 | 36.67% | 150 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|
Sequence information
| Nucleotide sequence |
ATGACACAGAGTGTACTGTGAATGAGCCCTTTTGCTTCATGTTCTCCTAGATGCCCTTCT GCCTCAGCTAGATCTTGCCCTAGACCTACTATGAGCAAGTGGTCATGCTGAATCTGGTAT GTGCAGACATCACATATATAGTCCGTACCTGTGGTCTCTTATGGCCTTTTCTGTGGTTGG ATTTGATATATTTGTCATTAGAACCACAGATATCAGACATTGCAGGCTGTACTGTAGCTA CCTGCAGAGAATCTCTGCCCAAGGTATTTAGCATATATGCCTTCCACATTTGTGTCACCC TGTTCCTGCACATCTCAGTATTCTACTCCTTTTTCTCTTGTTGCTTTTGCTACCATACAC TCACAGTGATTCCCATCTCCTTGCTCATCCTTTACTCATTAGTGCCTTCCATGTTCAATA CCATCACCTGTGGGGTAAAGAGTAAGCATATCCAAGAAAACATGGTACAGAGATTTTGTG GGAAAATTTCCTGC |
| Conceptual translation |
MFSXPFCLSXLPXYYEQVVMLNLVCAD\HIXVPVVSYGLFCGWIXICHXHRYQ TLQAVLXPA/ESLPKVFSIYAFHICVTLFLHISVFYSFFSCCFCYHTLTVIPISLLIL YSLVPSMFNTITCGVKSKHIQENMVQRFCGKISC Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 4,815,466 | 4,815,466 | Del(1) | -/G | rs35419998 (DbSNP) | |
| 11 | 4,815,463 | 4,815,464 | mnp | CT/TG | rs67677655 (DbSNP) | |
| 11 | 4,815,206 | 4,815,206 | SNP | A/G | rs10768241 (DbSNP) | |
| 11 | 4,815,464 | 4,815,464 | SNP | A/G | rs10742386 (DbSNP) | |
| 11 | 4,815,190 | 4,815,190 | SNP | A/G | rs17247598 (DbSNP) | |
| 11 | 4,815,348 | 4,815,348 | SNP | C/T | rs10768242 (DbSNP) | |
| 11 | 4,815,463 | 4,815,464 | mixed | -/A/C | rs10742385 (DbSNP) | |
| 11 | 4,793,960 | 4,793,960 | SNP | A/G | 1000GP (CEU) | |
| 11 | 4,793,976 | 4,793,976 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 4,794,118 | 4,794,118 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 4,794,233 | 4,794,233 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 11 | 4,794,234 | 4,794,234 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 4,813,583 | 4,820,635 | CopyNumber | Variation_71254 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.