OR55B1P Olfactory Receptor
| Gene Symbol | OR55B1P1 (View this gene in GeneCards) |
| Family | 55 |
| Subfamily | B |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-2, HsOR11.3.1P, ORL3611 |
| External Ids | HGNC: 15241 GeneBank: BK004562, NG_004317 ORDB: ORL3611 |
| Build #39 labels | OR55B1P, OR55B2P, OR55C1P |
| Chromosomal location | 11:4,146,316-4,147,295 (-) |
| Cluster | 11@4b |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52B1P | 35.5% | 307 |
| OR52B2 | 36.3% | 292 |
| OR52L1 | 35.05% | 311 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR55B1 | 84% | 325 |
| Mouse | Or55b3 | 78% | 326 |
| Rat | Or55b3 | 80% | 303 |
| Cow | OR55B1 | 82% | 327 |
| Horse | OR55B1 | 81% | 327 |
Sequence information
| Nucleotide sequence |
ATGGGTGAGGATGGAAATACAAGCACCTTCAACATCTCCTGCACCAAGTTCTTCCTGGTG GGTTTCCCTGGACTTCGAGAGTGGTGGCCCCTTCTGGTCCTGCCTCTTGTCTTCCTCTTT GTGACCATCATCTCTGCCAATGCCCTGGTCATCCACACAGTGGTTGCCCGGCAAAATCTG CATCAGCCTACGTGTATGCTCATCACTGTGCTCCTGGCTGTCAATATTCGTGCTGCCACA GCCGTGATGCCTAAAATGCTGGAGGGCTTTGTATATTATGCTAACCCCATATCGCTGCAT GGCCGCCTGGCCTAGGTGTTCTTTATCTACTTCACCCTCCTCCTGGACTACAACTTCCTC TGGCCATGGCCCTGGACTGCTACGTAGCCATCTGCCACCCACTCTGCTATTCTGACCTGA TGACCTCCCAGCTGCTGGGACTGCTGGCCATTCTTGCCTTGACACAGAGCCTGGGAGTGA CAGTGCCCTTGGTAGTACTAACTGCAAAAGCCCGATTCTGCCGGACAGCAGTGATTCGAC ACTTCACCTGTGAGTGCATTGCACTGCTGAGCATAGCTTGTGGAGACCTGACCTTCAACA ACTGGCTGGGGCTGGCTATGTGTTTGGTCACTGTAATCTCTGATATGGCCCTGCTGGGGA CCTCCTACACCCACATCATCTATGCTGCCTTCCGGATCTCTTCTTGGGGAGCCCAAGCCA AGGCCTTACACACGTGTGGCTCCCACCTACTGGTCATCCTCTCCATCTACGTCTCTGGTC TTTCCACTTCCATCACCTTCTGAGTAGCCAAGACTGTGTCCCAGAATGTCCAGAATCTAC TCAGTGCCATATACTTGCTGCTTCCAGGAGCCTTGAATCCTGTCATTTATGGGGTGAGGA CTAGGGAGATCCAGCAACATGTAGAAAAGATGCTCTGTGAAAAGGAAACAGCCCAGAAGG CTGGGGAGAAGCCAAAGAGG |
| Conceptual translation |
MGEDGNTSTFNISCTKFFLVGFPGLREWWPLLVLPLVFLFVTIISANALVIHTVVARQNL HQPTCMLITVLLAVNIRAATAVMPKMLEGFVYYANPISLHGRLAXFFIYFTLLLDYNF/br/>LLAMALDCYVAICHPLCYSDLMTSQLLGLLAILALTQSLGVTVPLVVLTAKARFCRTAVI RHFTCECIALLSIACGDLTFNNWLGLAMCLVTVISDMALLGTSYTHIIYAAFRISSWGAQ AKALHTCGSHLLVILSIYVSGLSTSITFXAKTVSQNVQNLLSAIYLLLPGALNPVIYGV RTREIQQHVEKMLCEKETAQKAGEKPKR Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 4,168,318 | 4,168,319 | mnp | CA/TG | rs71472160 (DbSNP) | |
| 11 | 4,167,903 | 4,167,903 | SNP | A/C | rs10742247 (DbSNP) | |
| 11 | 4,167,726 | 4,167,726 | SNP | A/G | rs12290431 (DbSNP) | |
| 11 | 4,167,889 | 4,167,889 | SNP | A/G | rs10767857 (DbSNP) | |
| 11 | 4,167,997 | 4,167,997 | SNP | A/G | rs7126014 (DbSNP) | |
| 11 | 4,167,604 | 4,167,604 | SNP | A/G | rs10742246 (DbSNP) | |
| 11 | 4,168,319 | 4,168,319 | SNP | A/G | rs4593997 (DbSNP) | |
| 11 | 4,168,335 | 4,168,335 | SNP | A/G | rs4480537 (DbSNP) | |
| 11 | 4,168,343 | 4,168,343 | SNP | A/G | rs4593998 (DbSNP) | |
| 11 | 4,167,846 | 4,167,846 | SNP | A/G | rs56167232 (DbSNP) | |
| 11 | 4,168,318 | 4,168,318 | SNP | C/T | rs4399323 (DbSNP) | |
| 11 | 4,168,332 | 4,168,332 | SNP | C/T | rs4399324 (DbSNP) | |
| 11 | 4,168,029 | 4,168,029 | SNP | C/T | rs10767858 (DbSNP) | |
| 11 | 4,168,046 | 4,168,046 | SNP | C/T | rs7115496 (DbSNP) | |
| 11 | 4,168,140 | 4,168,140 | SNP | C/T | rs7115615 (DbSNP) | |
| 11 | 4,168,308 | 4,168,308 | SNP | G/T | rs10835684 (DbSNP) | |
| 11 | 4,146,374 | 4,146,374 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 4,146,659 | 4,146,659 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 4,146,673 | 4,146,673 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 11 | 4,146,767 | 4,146,767 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 4,146,799 | 4,146,799 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 4,146,816 | 4,146,816 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 4,146,910 | 4,146,910 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 4,147,078 | 4,147,078 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 11 | 4,147,088 | 4,147,088 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 4,147,089 | 4,147,089 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 4,147,102 | 4,147,102 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 4,147,105 | 4,147,105 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 4,147,113 | 4,147,113 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 100 | -100 | SNP | G/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 4,162,477 | 4,325,792 | CopyNumber | Variation_2898 (DGV) |
| 11 | 4,055,945 | 4,510,188 | CopyNumber | Variation_3834 (DGV) |
| 11 | 4,162,474 | 4,325,792 | CopyNumber | Variation_8675 (DGV) |
| 11 | 4,167,416 | 4,238,930 | CopyNumber | Variation_9649 (DGV) |
| 11 | 4,166,641 | 4,378,126 | CopyNumber | Variation_30537 (DGV) |
| 11 | 4,165,546 | 4,168,625 | CopyNumber | #50 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.