OR56A1 Olfactory Receptor
| Gene Symbol | OR56A11 (View this gene in GeneCards) |
| Family | 56 |
| Subfamily | A |
| Pseudogene | No |
| CORP pseudogene probability score | 0.6 (pseudogene) |
| Aliases | OR11-75, HsOR11.3.94, ORL3283 |
| External Ids | HGNC: 14781 GeneBank: AB065821, BK004252, NM_001001917 ORDB: ORL3283 |
| Build #39 labels | OR56A1 |
| Chromosomal location | 11:6,026,751-6,027,692 (-) |
| Cluster | 11@6 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR56A4 | 83.33% | 312 |
| OR56A5 | 79.49% | 312 |
| OR56A7P | 82.11% | 313 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR56A1B | 90% | 313 |
| Mouse | Or56a3b | 77% | 312 |
| Rat | Or56a5 | 76% | 312 |
| Cow | OR56A4P | 81% | 312 |
| Cow | OR56A4D | 81% | 312 |
| Orang | OR56A4 | 84% | 312 |
| Orang | OR56A7P | 86% | 300 |
| Horse | OR56A4 | 80% | 312 |
| Chimp | OR56A4 | 83% | 312 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | BC136911 |
Sequence information
| Nucleotide sequence |
ATGGCGTCACCCAGCAACAGCTCCACTGTCCCAGTCTCTGAATTCCTCCTCATCTGCTTC CCCAACTTCCAGAGTTGGCAGCACTGGCTCTCCCTGCCCCTCAGCCTTCTCTTCCTCCTG GCCATGGGAGCTAACACCACCCTCCTGATCACCATCCAGCTGGAGGCCTCTCTGCACCAG CCCCTGTACTACCTGCTCAGCCTCCTCTCCCTGCTGGACATCGTGCTCTGCCTCACCGTC ATCCCCAAGGTCCTGGCCATCTTCTGGTATGATCTTAGGTCGATCAGCTTCCCTGCCTGC TTCCTCCAGATGTTCATCATGAACAGTTTCCTCCCCATGGAGTCCTGCACGTTTATGGTC ATGGCCTATGACCGTTATGTGGCCATCTGCCACCCACTGCGGTACCCATCCATCATCACT AATCAATTTGTGGCCAAAGCTAGTGTCTTCATTGTGGTGCGGAATGCGCTTCTTACTGCA CCCATTCCTATCCTCACTTCCCTGCTCCATTACTGTGGGGAAAATGTCATTGAGAACTGC ATCTGTGCCAACTTGTCTGTGTCCAGGCTCTCCTGTGATAATTTCACCCTTAACAGAATC TACCAATTTGTGGCTGGTTGGACCTTGCTGGGCTCAGATTTATTCCTCATCTTCCTCTCT TACACCTTCATTCTAAGAGCTGTGCTTAGATTCAAAGCAGAGGGGGCGGCAGTGAAGGCC CTGAGCACATGTGGCTCCCACTTCATCCTCATTCTTTTCTTCAGCACCATACTGCTGGTT GTGGTGTTGACAAACGTGGCCAGAAAGAAGGTCCCCATGGACATCCTGATCCTGCTGAAC GTCCTTCATCACCTTATTCCTCCTGCATTGAACCCTATTGTGTATGGGGTTCGGACCAAA GAGATAAAACAGGGAATTCAGAAGTTACTGCAGAGAGGGAGG |
| Conceptual translation |
MASPSNSSTVPVSEFLLICFPNFQSWQHWLSLPLSLLFLLAMGANTTLLITIQLEASLHQ PLYYLLSLLSLLDIVLCLTVIPKVLAIFWYDLRSISFPACFLQMFIMNSFLPMESCTFMV MAYDRYVAICHPLRYPSIITNQFVAKASVFIVVRNALLTAPIPILTSLLHYCGENVIENC ICANLSVSRLSCDNFTLNRIYQFVAGWTLLGSDLFLIFLSYTFILRAVLRFKAEGAAVKA LSTCGSHFILILFFSTILLVVVLTNVARKKVPMDILILLNVLHHLIPPALNPIVYGVRTK EIKQGIQKLLQRGR Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 6,048,400 | 6,048,399 | Ins(1) | -/T | rs72527977 (DbSNP) | |
| 11 | 6,048,056 | 6,048,056 | SYN | C/T | A/A | rs11040335 (DbSNP) |
| 11 | 6,026,826 | 6,026,826 | SYN | T/C | A/A | 1000GP (CEU) |
| 11 | 100 | -100 | SYN | T/C | A/A | 1000GP (YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 5,505,764 | 6,194,475 | CopyNumber | Variation_34458 (DGV) |
| 11 | 6,045,981 | 6,049,022 | CopyNumber | #65 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| G239A | C176F | % Freq | CORP | |
|---|---|---|---|---|
| 1 | G | C | 99.62 | 0.633 |
| 2 | G | F | 0.31 | 0.633 |
| 3 | A | C | 0.08 | 0.633 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR56A1.aApr07-unspliced | main_exon | 3UTR | chr11 | 6,026,748 | 6,026,751 | - |
| CDS | chr11 | 6,026,751 | 6,027,692 | - | ||
| 5UTR | chr11 | 6,027,692 | 6,027,704 | - | ||