OR56A3 Olfactory Receptor
| Gene Symbol | OR56A31 (View this gene in GeneCards) |
| Family | 56 |
| Subfamily | A |
| Pseudogene | No |
| CORP pseudogene probability score | 0.54 (pseudogene) |
| Aliases | OR11-48, OR11-59, OR11-51, HsOR11.3.90 |
| External Ids | HGNC: 14786 GeneBank: BK004305, BK004554 |
| Build #39 labels | OR56A6, OR56A3P |
| Chromosomal location | 11:5,947,347-5,948,291 (+) |
| Cluster | 11@6 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR56A1 | 78.32% | 309 |
| OR56A4 | 75.72% | 313 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR56A3E | 86% | 314 |
| Dog | OR56A3FP | 85% | 313 |
| Dog | OR56A3C | 84% | 314 |
| Mouse | Or56a3 | 85% | 314 |
| Mouse | Or56a3b | 85% | 314 |
| Rat | Or56a3b | 87% | 314 |
| Cow | OR56A3G | 83% | 314 |
| Cow | OR56A3IP | 81% | 313 |
| Cow | OR56A3H | 81% | 314 |
| Orang | OR56A1 | 77% | 314 |
| Horse | OR56A1 | 76% | 309 |
| Chimp | OR56A1 | 78% | 309 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h10967_at |
Sequence information
| Nucleotide sequence |
ATGACAACACACCGAAATGACACCCTCTCCACTGAAGCTTCAGACTTCCTCTTGAATTGT TTTGTCAGATCCCCCAGCTGGCAGCACTGGCTGTCCCTGCCCCTCAGCCTCCTTTTCCTC TTGGCCGTAGGGGCCAACACCACCCTCCTGATGACCATCTGGCTGGAGGCCTCTCTGCAC CAGCCCCTGTACTACCTGCTCAGCCTCCTCTCCCTGCTGGACATCGTGCTCTGCCTCACT GTCATCCCCAAGGTCCTGACCATCTTCTGGTTTGACCTCAGGCCCATCAGCTTCCCTGCC TGCTTCCTCCAGATGTACATCATGAATTGTTTCCTAGCCATGGAGTCTTGCACATTCATG GTCATGGCCTATGATCGTTATGTAGCCATCTGCCACCCACTGAGATATCCATCAATCATC ACTGATCACTTTGTAGTCAAGGCTGCCATGTTTATTTTGACCAGAAATGTGCTTATGACT CTGCCCATCCCCATCCTTTCAGCACAACTCCGTTATTGTGGAAGAAATGTCATTGAGAAC TGCATCTGTGCCAATATGTCTGTTTCCAGACTCTCCTGCGATGATGTCACCATCAATCAC CTTTACCAATTTGCTGGAGGCTGGACTCTGCTAGGATCTGACCTCATCCTTATCTTCCTC TCCTACACCTTCATTCTGCGAGCTGTGCTGAGACTCAAGGCAGAGGGTGCCGTGGCAAAG GCCCTAAGCACATGTGGCTCCCACTTCATGCTCATCCTCTTCTTCAGCACCATCCTTCTG GTTTTTGTCCTCACACATGTGGCTAAGAAGAAAGTCTCCCCTGATGTGCCAGTCTTGCTC AATGTTCTCCACCATGTCATTCCTGCAGCCCTTAACCCCATCATTTACGGGGTGAGAACC CAAGAAATTAAGCAGGGAATGCAGAGGTTGTTGAAGAAAGGGTGC |
| Conceptual translation |
MTTHRNDTLSTEASDFLLNCFVRSPSWQHWLSLPLSLLFLLAVGANTTLLMTIWLEASLH QPLYYLLSLLSLLDIVLCLTVIPKVLTIFWFDLRPISFPACFLQMYIMNCFLAMESCTFM VMAYDRYVAICHPLRYPSIITDHFVVKAAMFILTRNVLMTLPIPILSAQLRYCGRNVIEN CICANMSVSRLSCDDVTINHLYQFAGGWTLLGSDLILIFLSYTFILRAVLRLKAEGAVAK ALSTCGSHFMLILFFSTILLVFVLTHVAKKKVSPDVPVLLNVLHHVIPAALNPIIYGVRT QEIKQGMQRLLKKGC Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 5,968,653 | 5,968,653 | Del(1) | -/G | rs34047152 (DbSNP) | |
| 11 | 5,968,728 | 5,968,728 | NS | T/C | M/T | rs1840178 (DbSNP) |
| 11 | 5,969,185 | 5,969,185 | SYN | A/G | Q/Q | rs10769378 (DbSNP) |
| 11 | 5,947,955 | 5,947,955 | SYN | A/G | Q/Q | 1000GP (CEU, CHBJPT) |
| 11 | 5,947,498 | 5,947,498 | NS | T/C | M/T | 1000GP (CEU, CHBJPT) |
| 11 | 100 | -100 | NS | T/C | M/T | 1000GP (YRI) |
| 11 | 100 | -100 | SYN | A/G | Q/Q | 1000GP (YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 5,868,055 | 6,007,613 | CopyNumber | Variation_2903 (DGV) |
| 11 | 5,730,377 | 5,970,717 | CopyNumber | Variation_3836 (DGV) |
| 11 | 5,885,711 | 5,969,185 | CopyNumber | Variation_8676 (DGV) |
| 11 | 5,505,764 | 6,194,475 | CopyNumber | Variation_34458 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| M51T | % Freq | CORP | |
|---|---|---|---|
| 1 | T | 54.45 | 0.558 |
| 2 | M | 45.55 | 0.558 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR56A3.aApr07-unspliced | main_exon | CDS | chr11 | 5,947,347 | 5,948,291 | + |
| 3UTR | chr11 | 5,948,291 | 5,948,294 | + | ||