OR56B2P Olfactory Receptor
| Gene Symbol | OR56B2P1 (View this gene in GeneCards) |
| Family | 56 |
| Subfamily | B |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-63, HsOR11.3.79 |
| External Ids | HGNC: 15246 GeneBank: AB065814, BK004384, NG_004326 |
| Build #39 labels | OR56B2 |
| Chromosomal location | 11:5,765,162-5,766,046 (+) |
| Cluster | 11@6 |
| Synteny | CLIC#23 |
| Remarks | Coding for partial protein |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR56B1 | 73.29% | 292 |
| OR56B3P | 65.31% | 294 |
| OR56B4 | 68.37% | 294 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR56B2 | 86% | 294 |
| Dog | OR56B2C | 85% | 295 |
| Dog | OR56B2D | 84% | 295 |
| Mouse | Or56b2 | 82% | 295 |
| Rat | Or56b2 | 84% | 295 |
| Cow | OR56B2FP | 83% | 296 |
| Cow | OR56B2C | 83% | 295 |
| Cow | OR56B2E | 84% | 287 |
| Orang | OR56B2 | 93% | 295 |
| Horse | OR56B2I | 87% | 295 |
| Horse | OR56B2 | 85% | 295 |
| Chimp | OR56B2 | 97% | 295 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h10912_at |
Sequence information
| Nucleotide sequence |
ATGGGATTCCCTGGCATTCACAGTTGGCAGCACTGGCTCTCCCTGCCCCTGGCTCTGCTC TACCTCTTAGCTCTCAGTGCCAACATCCTTATCCTGATCATCATCAACAAAGAGGCAGCA CTGCACCAGCCTATGTACTATTTCCTGGGCATCTTGGCTATGGCAGACATAGGCCTGGCT ACCACCATCATGCCTAAGATTTTGGCCATCTTATGGTTCAATGCTAAGACCATCAGTCTC CTGGAGTGCTTTGCTCAGATGTATGCCATACATTGCTTTGTGGCCATGGAATCAAGTACC TTTGTCTGCATGGCTATTGATAGATATGTAGCCATTTGTCGACCGCTACGATATCCATCA ATCATCACTGAATCTTTTGTTTTCAAAGCAAACGGGTTCATGGCACTGAGAAACAGCCTG TGTCTCATCTCAGTGCCTCTGTTGGCTGCCCAGAGGCATTACTGCTCCCAGAATCAAATT GAGCACTGTCTTTGTTCTAACCTTGGAGTCACTAGCCTATCTTGTGATGATCGAAGAATC AATAGCATTAACCAGGTCCTTTTGGCTTGGACACTCATGGGAAGTGACCTGGGTTTGATT ATTTTATCATATGCTCTAATACTTTACTCTGTCCTGAAGCTGAACTCTCCAGAAGCTGCA TCCAAGGCCTTAAGTACCTGCACCTCCCACCTCATCTTAATCCTTTTCTTCTACACAGTC ATCATTGTGATTTCCATTACTCGTAGTACAGGAATGAGAGTTCCCCTTATTCCAGTTCTA CTTAATGTGCTACACAATGTCATTCCCCCTGCCCTGAACCCCATGGTATATGCACTCAAG AACAAGGAACTCAGGCAAGGCTTATACAAGGTACTTAGACTGGAG |
| Conceptual translation |
MGFPGIHSWQHWLSLPLALLYLLALSANILILIIINKEAALHQPMYYFLGILAMADIGLA TTIMPKILAILWFNAKTISLLECFAQMYAIHCFVAMESSTFVCMAIDRYVAICRPLRYPS IITESFVFKANGFMALRNSLCLISVPLLAAQRHYCSQNQIEHCLCSNLGVTSLSCDDRRI NSINQVLLAWTLMGSDLGLIILSYALILYSVLKLNSPEAASKALSTCTSHLILILFFYTV IIVISITRSTGMRVPLIPVLLNVLHNVIPPALNPMVYALKNKELRQGLYKVLRLE Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 5,787,042 | 5,787,041 | Ins(1) | -/C | rs34466274 (DbSNP) | |
| 11 | 5,786,427 | 5,786,427 | SNP | A/G | rs73408147 (DbSNP) | |
| 11 | 5,786,551 | 5,786,551 | SNP | A/G | rs73408149 (DbSNP) | |
| 11 | 5,787,134 | 5,787,134 | SNP | A/G | rs10838615 (DbSNP) | |
| 11 | 5,786,746 | 5,786,746 | SNP | C/T | rs73408152 (DbSNP) | |
| 11 | 5,786,784 | 5,786,784 | SNP | C/T | rs7104920 (DbSNP) | |
| 11 | 5,765,554 | 5,765,554 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 5,765,904 | 5,765,904 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 5,782,093 | 5,812,233 | CopyNumber | Variation_0414 (DGV), Variation_34987 (DGV) |
| 11 | 5,776,623 | 5,842,356 | CopyNumber | Variation_2902 (DGV) |
| 11 | 5,730,377 | 5,970,717 | CopyNumber | Variation_3836 (DGV) |
| 11 | 5,784,484 | 5,809,387 | CopyNumber | Variation_6926 (DGV) |
| 11 | 5,783,884 | 5,810,228 | CopyNumber | Variation_23218 (DGV) |
| 11 | 5,784,904 | 5,809,056 | CopyNumber | Variation_30540 (DGV) |
| 11 | 5,505,764 | 6,194,475 | CopyNumber | Variation_34458 (DGV) |
| 11 | 5,783,630 | 5,809,284 | CopyNumber | Variation_37479 (DGV) |
| 11 | 5,784,575 | 5,809,283 | CopyNumber | Variation_41250 (DGV) |
| 11 | 5,784,556 | 5,809,291 | CopyNumber | Variation_43822 (DGV) |
| 11 | 5,777,210 | 5,805,515 | CopyNumber | Variation_48854 (DGV) |
| 11 | 5,784,695 | 5,809,362 | CopyNumber | Variation_58525 (DGV) |
| 11 | 5,784,859 | 5,809,285 | CopyNumber | Variation_65851 (DGV) |
| 11 | 5,782,017 | 5,809,657 | CopyNumber | Variation_75531 (DGV), Variation_85631 (DGV) |
| 11 | 5,783,842 | 5,809,435 | CopyNumber | Variation_101118 (DGV) |
| Deletion | 245 (Hasin) | |||
| 11 | 5,786,292 | 5,789,276 | Deletion | #13 (Waszak) |
| 11 | 5,784,438 | 5,809,353 | Del(-24708) | #14(modil) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.