OR5AL1P Olfactory Receptor
| Gene Symbol | OR5AL1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | AL |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-184, HsOR11.11.66P, ORL3516 |
| External Ids | HGNC: 14844 GeneBank: AF399353, AF546602-AF546615, BK004654, NG_004144 ORDB: ORL3516 |
| Build #39 labels | OR5AL1P |
| Chromosomal location | 11:56,412,696-56,413,680 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks | Segregating Pseudo Gene, a polymorphism of 2 bp del at positions 468-469 (rs10633383) |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5AL2P | 72.4% | 308 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5AL1 | 83% | 321 |
| Mouse | Or5al1 | 81% | 313 |
| Rat | Or5al1 | 80% | 311 |
| Cow | OR5AL11P | 77% | 313 |
| Orang | OR5E1P | 52% | 307 |
| Horse | OR5AL1 | 84% | 313 |
| Chimp | OR5AL1 | 97% | 329 |
Sequence information
| Nucleotide sequence |
ATGTGTGCTCTAAAGGGTTTTCTGGAAGAAAACTTTTATACCTACTCAGTGGCCAAAGGC AATCATTCAACAGTGTATGAATTTATCCTCTTGGGGCTCACAGATAATGCAGAGCTTCAA GTCACTCTCTTTGGTATATTCCTTGTAGTATACTTAGCTAGCTTTATGGGTAATTTCGGT TTGATTATGCTAATTCAAATCAGTCCTCAGCTTCATACACCCATGTATTTTTTCCTCAGC CATCTGGCTTTTGTTGATTTTTCTTTTACTTCATCTGTTGCCCCAAATACCTTGGTAAAT TTTCTGTGTGAAGTTAAAAGTATAACATTTTATGCATGTGCCATTCAGGTATGCTGCTTC ATCACATTTGTAGTTTGTGAATTATATTTGCTCTCAATCATGGCATATGATCGGTATGTT GCCATCTGTAACCCTTTACTTTATGTCATTCTCATTCCTAGAAAACTGTATTAAACTGAT TGCTAGCACGTATGTGTATGGATTCACTGTGGGACTTGTACAGACAGTGGCGACATCCTA CTTGTCTTTTTGTGATTCCAACGTGATCAACCACTTCTACCATGATGATGTTCCATTAGT GGCTCTGGCCTGTTCTGACACTCATGTCAAAGAGCTGATGTTGTTAATCATTGCTGGGTT CAATACTCTCTGCTCTCTAGTAATTGTGCTGATTTCTTATGGTTTCATTTTCTTTGCCAT CCTGAGGATACATTCTGCTGAAGGGAGACAGAAAGCATTTTCTACCAGTGCTTCCCATCT GACCTCCATCACAATATTTTATGGAACAATCATTTTTATGTACCCGCAGCCCAAGTCAAG CCATTCCCTGAATATGGATAAAGTTGCTTCTGTGTTTAATGTGGTAGTGATTCCTACATT AAACCCACTGATCTATAGTTTAAGAAATCAGGAGGTAAAAAATGCACTAAAGAGAATTAT AGAAAAGTTATGTTTGGCTGTCAAA |
| Conceptual translation |
MCALKGFLEENFYTYSVAKGNHSTVYEFILLGLTDNAELQVTLFGIFLVVYLASFMGNFG LIMLIQISPQLHTPMYFFLSHLAFVDFSFTSSVAPNTLVNFLCEVKSITFYACAIQVCCF ITFVVCELYLLSIMAYDRYVAICNPLLYVILIPRK\IKLIASTYVYGFTVGLVQTVATS YLSFCDSNVINHFYHDDVPLVALACSDTHVKELMLLIIAGFNTLCSLVIVLISYGFIFFA ILRIHSAEGRQKAFSTSASHLTSITIFYGTIIFMYPQPKSSHSLNMDKVASVFNVVVIPT LNPLIYSLRNQEVKNALKRIIEKLCLAVK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 11 | 56,180,245 | 56,180,245 | SNP | C/T | rs34246512 (DbSNP) | |
| 11 | 56,180,492 | 56,180,492 | SNP | C/T | rs17150539 (DbSNP) | |
| 11 | 56,180,637 | 56,180,636 | Ins(2) | -/CT | rs10679432 (DbSNP) | |
| 11 | 56,180,638 | 56,180,637 | Ins(2) | -/CT | rs35653369 (DbSNP) | |
| 11 | 56,180,639 | 56,180,638 | rescued_Ins(2) | -/CT | rs10633383 (DbSNP) | |
| 11 | 56,180,640 | 56,180,639 | Ins(2) | -/CT | rs35725697 (DbSNP) | |
| 11 | 56,180,753 | 56,180,753 | SNP | A/G | rs6591323 (DbSNP) | |
| 11 | 56,180,783 | 56,180,783 | SNP | G/T | rs4939046 (DbSNP) | |
| 11 | 56,180,925 | 56,180,925 | SNP | A/G | rs67610338 (DbSNP) | |
| 11 | 56,181,034 | 56,181,034 | SNP | A/G | rs10501352 (DbSNP) | |
| 11 | 56,412,769 | 56,412,769 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 56,413,277 | 56,413,277 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 56,413,307 | 56,413,307 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 11 | 56,413,449 | 56,413,449 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 56,413,558 | 56,413,558 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 56,413,622 | 56,413,622 | SNP | A/C | 1000GP (CEU) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 221 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.