OR5AM1P Olfactory Receptor
| Gene Symbol | OR5AM1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | AM |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-206, HsOR11.11.81P, ORL3557 |
| External Ids | HGNC: 15254 GeneBank: BK004603, NG_004211 ORDB: ORL3557 |
| Build #39 labels | OR5AM1P |
| Chromosomal location | 11:56,619,746-56,620,810 (-) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks | Disrupted by Line repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5M13P | 80.29% | 355 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Chimp | OR5M13HP | 94% | 148 |
Sequence information
| Nucleotide sequence |
GTGAGCATGAGCTTCTTAATAAGAAGTGATTCAACACTACACACTCCAATGTGCTTGTTC CTCAGTCATCTCTCCTTTGTAGATCTCTATTATGCCACCAATGCCACTCCTCCGATGCTG GTTAACTTTTTTTTTCCAAGAGAAAAACCGTTTCCTTTATTGGTTGCTTTATCCAATTTC ACCTTTTCATTGCACTGGTGATCACAGATTATCATATGCTCACAGTGATGGTGTATGACC ACTACATGGCCATCTGCAAGCCTTTGTTATATGGAAGCAAAATGTCCAGGTGTGTCTGCC TCTGTCTCACTGCTGCTCCCTATATTTATGGCTCTGCAAATGGTCTGGTACAGGTCATCC TGATGCTTTGTCTGTTCTTCTGTGAACCCAATGAGATCAACCACTTTTTTTTTTTTGGAG AAAATGCATTATATGCACATTTAATTCCACTATAAATTTTTGAATGGACGGTTGGAGAGG AAGGGAGAAATACATATTAACGGAGAGAATACCACCCAGAAAGTATATACAATGGGAGAA AGGAACCTGTTGATCCAAGTTTCCATATTCTTATTATGGCATATAAGGTCATGATTATTT TCTCAGTATGAAGCATCTCCCAGGGCTGACTCTGATGTAAAATTGGAGATCAACCACTTT TATTATGCAGAACCACCCCTCTTAGTCCTCGCCTGCTTGGATACTTATGTCAAAGAAACT GCCATGTTCATGGTGGCTGGTTCCAACCTCATCTGCCCTCTCACTATCATCTTTATTTCC TACACTTTCATCTTCACAGACATTCTGCATATCTGCACTGCTGAGGGAAGGTACAATGCC TTCTCCACCTGCGGGTCCCTTGTGACTGCCGTCACTGTCTTTCAAGGAACGCTGTTTCAC ATGTGCCTGAGGCCCCCTTCTGAGGCATCTGTAGAACAGGGGAAAATTGTAGCTGCTTTT TATATCTTTGTGAGTCCTACGTTAAACCCATTGATCTACCGTCTGAGGAATAAAAATGTT AAAAGAACAATAAGGGAAGTTATCCAAAAGAAACTGTTTGCTAAG |
| Conceptual translation |
VSMSFLIRSDSTLHTPMCLFLSHLSFVDLYYATNATPPMLVNF/FSKRKTVSFIGCFIQ FHLFIALVITDYHMLTVMVYDHYMAICKPLLYGSKMSRCVCLCLTAAPYIYGSANGLVQV ILMLCLFFCEPNEINHFFFFGENALYAHLIPLXFEWTVGEEGRNTYXREYHPESIYNG RKEPVDPSFHILIMAYKVMIIFSVXISQGXXKIGDQPLLLCR\PLLVLACLDTYVK ETAMFMVAGSNLICPLTIIFISYTFIFTDILHICTAEGRYNAFSTCGSLVTAVTVFQGTL FHMCLRPPSEASVEQGKIVAAFYIFVSPTLNPLIYRLRNKNVKRTIREVIQKKLFAK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 56,387,882 | 56,387,882 | Del(1) | -/A | rs60255426 (DbSNP) | |
| 11 | 56,387,883 | 56,387,882 | Ins(1) | -/A | rs58415258 (DbSNP) | |
| 11 | 56,387,871 | 56,387,870 | Ins(1) | -/A | rs35395862 (DbSNP) | |
| 11 | 56,388,048 | 56,388,048 | SNP | A/G | rs11228683 (DbSNP) | |
| 11 | 56,387,773 | 56,387,773 | SNP | C/T | rs12418301 (DbSNP) | |
| 11 | 56,387,897 | 56,387,897 | SNP | G/T | rs2852419 (DbSNP) | |
| 11 | 56,620,246 | 56,620,246 | SNP | T/C | 1000GP (CEU) | |
| 11 | 56,620,297 | 56,620,297 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 56,620,394 | 56,620,394 | SNP | C/A | 1000GP (CEU) | |
| 11 | 56,620,420 | 56,620,420 | SNP | T/C | 1000GP (CEU) | |
| 11 | 56,620,572 | 56,620,572 | SNP | G/A | 1000GP (CEU) | |
| 11 | 56,620,698 | 56,620,698 | SNP | G/A | 1000GP (CEU) | |
| 11 | 56,620,716 | 56,620,716 | SNP | G/C | 1000GP (CEU) | |
| 11 | 56,620,408 | 56,620,408 | SNP | T/G | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 56,385,222 | 56,388,386 | Deletion | #223 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.