OR5AQ1P Olfactory Receptor
| Gene Symbol | OR5AQ1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | AQ |
| Pseudogene | Yes |
| CORP pseudogene probability score | 0.62 (pseudogene) |
| Aliases | OR11-162, OR11-165, HsOR11.11.42P, ORL3576 |
| External Ids | HGNC: 15259 GeneBank: AB065451, AB065593, BK004580, BK004708, NG_004208 ORDB: ORL3576 |
| Build #39 labels | OR5AQ1P |
| Chromosomal location | 11:56,054,365-56,055,300 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks | Full ORF without a suitable ATG |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5J1P | 61.46% | 301 |
| OR5J2 | 58.14% | 301 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5AQ1 | 89% | 307 |
| Mouse | Or5aq1 | 81% | 302 |
| Mouse | Or5aq1b | 80% | 304 |
| Rat | Or5aq1 | 80% | 302 |
| Cow | OR5AQ8P | 78% | 254 |
| Orang | OR5G1 | 53% | 305 |
| Horse | OR5AQ1 | 83% | 310 |
| Horse | OR5AQ1E | 82% | 310 |
| Chimp | OR5J1 | 62% | 307 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529247 |
| GNF Atlas2 | gnf1h10929_at |
Sequence information
| Nucleotide sequence |
ACGAGAGGCTGGAATCATACAGGTGCAAAGGAATTCCTCCTGGTAGGGTTAACTGAAAAT CCTAATTTGCAGATCCCACTCTTTTTGCTTGTCACTCTGATTTATTTCATCACTTTGTTG GATAATTTGGGTATAATTATTTTAATCTGGTTAAATGCCCAACTTCATACTCCAATGTAC TTCTTCCTTGGCAACCTCTCCTTTTGTGATATCTGCTACTCTACTGTCTTTGCTCCTAAG ATGCTAGTCAATTTCCTATCAAAACATAAGTCCAGTACATTTTCTGGCTGTGTTCTACAG AGTTTCCCTTTTGCAGTATATGTAACCACAAAGGACATTCTCCTGTCCATGATGGCTTAT GACCATTACGTGGCCATAGCTAATCCCTTGTTGTATACAGTCATTATGGCCCAAAAAGTT TGTATTCAGATGGTCCTTGCTTCTTACTTAGGTGGGCTCATTAATTCCCTGACACACACA ATAGGTTTGCTCAAATTAGACTTCTGTGGTCCTAATATTGTGAATCATTATTTCTGTGAT GTTCCTCCTCTTCTGAGGCTTTCTTGCTCTGATGCTCATATCAATGAAATGCTGCCCTTG GTCTTCTCTGGGCTCATTGCAATGTTCACTTTCATTGTCATTATGGTGTCTTATATCTGC ATCATCATTGCCATCCAGAGAATCCATGCAGCTGAGGGAAGGTACAAAGCCTTCTCCACT TGTGTCTCCCACCTAACCACGGTGACCTTATTCTATGGGTCTGTTTCTTTTAGTTATATC CAGCCAAGTTCTCAGTATTCCTTGGAACAGGAGAAGGTCTTGGCTGTGTTTTATACACTG GTGATCCCCATGCTAAACCCACTTATTTATAGCCTGAGAAATAAGGATGTAAAAGATGCA GCCAAAAGGTTGATATGGTGGGGGAAAAACCCCACT |
| Conceptual translation |
TRGWNHTGAKEFLLVGLTENPNLQIPLFLLVTLIYFITLLDNLGIIILIWLNAQLHTPMY FFLGNLSFCDICYSTVFAPKMLVNFLSKHKSSTFSGCVLQSFPFAVYVTTKDILLSMMAY DHYVAIANPLLYTVIMAQKVCIQMVLASYLGGLINSLTHTIGLLKLDFCGPNIVNHYFCD VPPLLRLSCSDAHINEMLPLVFSGLIAMFTFIVIMVSYICIIIAIQRIHAAEGRYKAFST CVSHLTTVTLFYGSVSFSYIQPSSQYSLEQEKVLAVFYTLVIPMLNPLIYSLRNKDVKDA AKRLIWWGKNPT Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 55,822,253 | 55,822,253 | Del(1) | -/A | rs34252513 (DbSNP) | |
| 11 | 55,822,189 | 55,822,189 | SNP | A/T | rs61729642 (DbSNP) | |
| 11 | 55,822,658 | 55,822,658 | SNP | A/T | rs61746167 (DbSNP) | |
| 11 | 55,822,479 | 55,822,479 | SNP | C/T | rs61742523 (DbSNP) | |
| 11 | 55,822,289 | 55,822,289 | SNP | C/T | rs61891189 (DbSNP) | |
| 11 | 55,821,842 | 55,821,842 | SNP | T/C | rs2512747 (DbSNP) | |
| 11 | 56,054,366 | 56,054,366 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 56,054,713 | 56,054,713 | SNP | A/T | 1000GP (CEU) | |
| 11 | 56,054,813 | 56,054,813 | SNP | T/C | 1000GP (CEU) | |
| 11 | 56,055,182 | 56,055,182 | SNP | T/A | 1000GP (CEU) | |
| 11 | 56,054,794 | 56,054,794 | SNP | A/G | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 55,689,863 | 55,849,156 | CopyNumber | Variation_2927 (DGV) |
| 11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
| 11 | 55,685,799 | 55,842,512 | CopyNumber | Variation_9189 (DGV) |
| 11 | 55,685,556 | 55,836,620 | CopyNumber | Variation_48847 (DGV) |
| 11 | 55,683,109 | 55,833,490 | CopyNumber | Variation_85786 (DGV) |
| CopyNumber | 169 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.