OR5B19P Olfactory Receptor
| Gene Symbol | OR5B19P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | B |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.12.15P, ORL3629 |
| External Ids | HGNC: 15269 GeneBank: NG_004205 ORDB: ORL3629 |
| Build #39 labels | OR5B19P |
| Chromosomal location | 11:58,343,813-58,344,670 (-) |
| Cluster | 11@58 |
| Synteny | CLIC#27 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5B1P | 70% | 310 |
| OR5B2 | 64.17% | 307 |
| OR5B3 | 68.49% | 311 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5B2B | 68% | 311 |
| Mouse | Or5b3 | 65% | 307 |
| Rat | Or5b95 | 65% | 312 |
| Cow | OR5B141 | 67% | 311 |
| Orang | OR5B1P | 69% | 311 |
| Horse | OR5B2 | 68% | 312 |
| Chimp | OR5B3 | 69% | 311 |
Sequence information
| Nucleotide sequence |
ATGTAGAACAGTAGAGAGGCGTCACAGTTCATCTTCCTAGGACTAAGCAATGTCCCAGAA CTGCAGGTCCCCTTCTTTATCATGTTTGTTCTCATCTATCTCATCAATGTAGTTGGAAAC TTGGGGATGATCATTTTGATTCTCTGGTACTCTCAGCTCCACAATCCAATGTACTTCTTC TTCAGTAATCTGTCTCTGGTAGACTTTTTTTACTCTTCAGTTGTCACTCCAAAGGTCATG ACTGGGCTCCTTAGAGAAGACAAAATCATTTCCTATACTGTGTGGGCTACTCAGACATTC TTTTCTGATTCCTTTGCCAGTGTGGTAAATTTATTATTGGCCTTAATGGCCTCTGGCCAC TATGCAGCAGTGTGCAAACCCCTGCATTACACCACCACCATGATGACAAGTGTGTGTACA TGTCTGGCCATAGGTTGATACGTTGGTGGTTTCCTGAATGCCTCCATTCACACTGGGGAA ACATTCAGTCTCTTTCTGTATGTCCAGTGAAGTCCATCACTTTTTCTGTGAGGTTCCAGC AGTCATGGCTCTGTCTTGCTCTGATAGACATGTGAATGTAGTGGTTCTTGTTTATGTAAC CAGCTCAATATCCTCTTTGCCCTTCTAGTTATCTTGATATCCTACTTATTGATGTTTATC ACCATCCTAAAGATGCACTCAACTGCAGGATACCAGAAGGCTTTGGCCATTTGTGCCTCT CACCTCACTGCAGTTGCCATCTTCTATGGGACTATTATCTTCATGCATATACAGCCCAGC TCCAGTCATTCCATTGACACAGACAAAATTGCAGCTGTGTTTTATACTATTGTCTTCCCC ATGGTGAACCATGTGGTC |
| Conceptual translation |
MXSREASQFIFLGLSNVPELQVPFFIMFVLIYLINVVGNLGMIILILWYSQLHNPMYFF FSNLSLVDFFYSSVVTPKVMTGLLREDKIISYTVWATQTFFSDSFASVVNLLLALMASGH YAAVCKPLHYTTTMMTSVCTCLAIGXVGGFLNASIHTGETFSLF\MSSEVHHFFCEVP AVMALSCSDRHVNVVVLVYVTS/NILFALLVILISYLLMFITILKMHSTAGYQKALAIC ASHLTAVAIFYGTIIFMHIQPSSSHSIDTDKIAAVFYTIVFPMVNHVVXLKNKVKSTFK KIVEKVKLSLGL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | A/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 11 | 58,111,308 | 58,111,308 | SNP | C/A | rs746248 (DbSNP) | |
| 11 | 58,111,388 | 58,111,388 | SNP | A/T | rs12786471 (DbSNP) | |
| 11 | 58,111,411 | 58,111,411 | SNP | C/T | rs12283108 (DbSNP) | |
| 11 | 58,111,513 | 58,111,513 | SNP | C/T | rs1938648 (DbSNP) | |
| 11 | 58,111,700 | 58,111,700 | SNP | A/G | rs11229371 (DbSNP) | |
| 11 | 58,112,130 | 58,112,130 | SNP | A/C | rs1938649 (DbSNP) | |
| 11 | 58,343,835 | 58,343,835 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 11 | 58,344,040 | 58,344,040 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 58,344,141 | 58,344,141 | SNP | C/T | 1000GP (CEU) | |
| 11 | 58,344,227 | 58,344,227 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 58,344,573 | 58,344,573 | SNP | T/C | 1000GP (CHBJPT) | |
| 11 | 58,344,657 | 58,344,657 | SNP | C/A | 1000GP (CEU, CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 185 (Hasin) | |||
| 11 | 58,109,286 | 58,112,243 | CopyNumber | #74 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.