OR5BA1P Olfactory Receptor
| Gene Symbol | OR5BA1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | BA |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-224, HsOR11.12.1P, ORL3616 |
| External Ids | HGNC: 15270 GeneBank: AB065494, BK004604, NG_004204 ORDB: ORL3616 |
| Build #39 labels | OR5BA1P |
| Chromosomal location | 11:57,866,302-57,867,280 (-) |
| Cluster | 11@58 |
| Synteny | CLIC#27 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5B12 | 51.17% | 299 |
| OR5B21 | 51.16% | 303 |
| OR5R1 | 46.89% | 305 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5BA1 | 89% | 314 |
| Mouse | Or5ap2 | 51% | 307 |
| Rat | Or5ap2 | 52% | 302 |
| Cow | OR5BA5P | 74% | 304 |
| Orang | OR5BA1 | 98% | 314 |
| Horse | OR5BA1 | 86% | 314 |
| Chimp | OR5BA1 | 98% | 315 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | BI019198 |
Sequence information
| Nucleotide sequence |
TTGCCAACTGTAACCTCTGCAGATGACACCTGGAGAACTAGCCCTTGCCAGTGGCAACCA CACCCCAGTCACCAAGTTCATCTTGCAGGGATTCTCCAATTATCCAGACCTCCAGGAGCT TCTCTTCGGAGCCATCCTGCTCATCTATGCCATAACAGTGGTGGGCAACTTGGGAATGAT GGCACTCATCTTCACAGACTCCCATCTCCAAAGCCCAATGTATTTCTTCCTCAATGTCCT CTCGTTTCTTGATATTTGTTACTCTTCTGTGGTCACACCTAAGCTCTTGGTCAACTTCCT GGTCTCTGACAAGTCCATCTCTTTTGAGGGCTGTGTGGTCCAGCTCGCCTTCTTTGTAGT GCATGTGACAGCTGAGAGCTTCCTGCTGGCCTCCATGGCCTATGACCGCTTCCTAGCCAT CTGTCAACCCCTCCATTATGGTTCTATCATGACCAGGGGGACCTGTCTCCAGCTGGTAGC TGTGTCCTATGCATTTGGTGGAGCCAACTCCGCTATCCAGACTGGAAATGTCTTTGCCCT GCCTTTCTGTGGGCCCAACTAGCTAACACACTACTACTGTGACATACCACCCCTTCTCCA CCTGGCTTGTGCCAACACAGCCACAGCAAGAGTGGTCCTCTATGTCTTTTCTGCTCTGGT CACCCTTCTGCCTGCTGCAGTCATTCTCACCTCCTACTGCTTGGTCTTGGTGGCCATTGG GAGGATGCGCTCAGTAGCAGGGAGGGAGAAGGACCTCTCCACTTGTGCCTCCCACTTTCT GGCCATTGCCATTTTCTATGGCACCGTGGTTTTCACCTATGTTCAGCCCCATGGATCTAC TAACAATACCAATGGCCAAGTAGTGTCCGTCTTCTACACCATCATAATTCCCATGCTCAA TCCCTTCATCTATAGCCTCCGCAACAAGGAGGTGAAGGGCGCTCTGCAGAGGAAGCTTCA GGTCAACATCTTTCCCGGC |
| Conceptual translation |
LPTVTSADDTWR\ALASGNHTPVTKFILQGFSNYPDLQELLFGAILLIYAITVVGNLGM MALIFTDSHLQSPMYFFLNVLSFLDICYSSVVTPKLLVNFLVSDKSISFEGCVVQLAFFV VHVTAESFLLASMAYDRFLAICQPLHYGSIMTRGTCLQLVAVSYAFGGANSAIQTGNVFA LPFCGPNXTHYYCDIPPLLHLACANTATARVVLYVFSALVTLLPAAVILTSYCLVLVAI GRMRSVAGREKDLSTCASHFLAIAIFYGTVVFTYVQPHGSTNNTNGQVVSVFYTIIIPML NPFIYSLRNKEVKGALQRKLQVNIFPG Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 57,633,948 | 57,633,948 | SNP | A/G | rs636807 (DbSNP) | |
| 11 | 57,634,193 | 57,634,193 | SNP | A/G | rs637770 (DbSNP) | |
| 11 | 57,633,885 | 57,633,885 | SNP | A/G | rs55838210 (DbSNP) | |
| 11 | 57,634,346 | 57,634,346 | SNP | G/A | rs61730400 (DbSNP) | |
| 11 | 57,634,041 | 57,634,041 | SNP | T/C | rs61730453 (DbSNP) | |
| 11 | 57,634,625 | 57,634,625 | SNP | T/C | rs61743110 (DbSNP) | |
| 11 | 57,866,476 | 57,866,476 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 57,866,721 | 57,866,721 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 100 | -100 | SNP | C/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 57,631,774 | 57,634,852 | CopyNumber | #139 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.