Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR5BA1P Olfactory Receptor

Gene Symbol OR5BA1P1 (View this gene in GeneCards)
Family 5
Subfamily BA
Pseudogene Yes
CORP pseudogene probability score
Aliases OR11-224, HsOR11.12.1P, ORL3616
External Ids HGNC: 15270   GeneBank: AB065494, BK004604, NG_004204   ORDB: ORL3616   
Build #39 labels OR5BA1P
Chromosomal location 11:57,866,302-57,867,280 (-)
Cluster 11@58
Synteny CLIC#27
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR5B12 51.17% 299
OR5B21 51.16% 303
OR5R1 46.89% 305

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR5BA1 89% 314
Mouse Or5ap2 51% 307
Rat Or5ap2 52% 302
Cow OR5BA5P 74% 304
Orang OR5BA1 98% 314
Horse OR5BA1 86% 314
Chimp OR5BA1 98% 315

Expression evidences

Source Accession
ESTs BI019198

Sequence information

Nucleotide sequence TTGCCAACTGTAACCTCTGCAGATGACACCTGGAGAACTAGCCCTTGCCAGTGGCAACCA
CACCCCAGTCACCAAGTTCATCTTGCAGGGATTCTCCAATTATCCAGACCTCCAGGAGCT
TCTCTTCGGAGCCATCCTGCTCATCTATGCCATAACAGTGGTGGGCAACTTGGGAATGAT
GGCACTCATCTTCACAGACTCCCATCTCCAAAGCCCAATGTATTTCTTCCTCAATGTCCT
CTCGTTTCTTGATATTTGTTACTCTTCTGTGGTCACACCTAAGCTCTTGGTCAACTTCCT
GGTCTCTGACAAGTCCATCTCTTTTGAGGGCTGTGTGGTCCAGCTCGCCTTCTTTGTAGT
GCATGTGACAGCTGAGAGCTTCCTGCTGGCCTCCATGGCCTATGACCGCTTCCTAGCCAT
CTGTCAACCCCTCCATTATGGTTCTATCATGACCAGGGGGACCTGTCTCCAGCTGGTAGC
TGTGTCCTATGCATTTGGTGGAGCCAACTCCGCTATCCAGACTGGAAATGTCTTTGCCCT
GCCTTTCTGTGGGCCCAACTAGCTAACACACTACTACTGTGACATACCACCCCTTCTCCA
CCTGGCTTGTGCCAACACAGCCACAGCAAGAGTGGTCCTCTATGTCTTTTCTGCTCTGGT
CACCCTTCTGCCTGCTGCAGTCATTCTCACCTCCTACTGCTTGGTCTTGGTGGCCATTGG
GAGGATGCGCTCAGTAGCAGGGAGGGAGAAGGACCTCTCCACTTGTGCCTCCCACTTTCT
GGCCATTGCCATTTTCTATGGCACCGTGGTTTTCACCTATGTTCAGCCCCATGGATCTAC
TAACAATACCAATGGCCAAGTAGTGTCCGTCTTCTACACCATCATAATTCCCATGCTCAA
TCCCTTCATCTATAGCCTCCGCAACAAGGAGGTGAAGGGCGCTCTGCAGAGGAAGCTTCA
GGTCAACATCTTTCCCGGC
Conceptual translation LPTVTSADDTWR\ALASGNHTPVTKFILQGFSNYPDLQELLFGAILLIYAITVVGNLGM
MALIFTDSHLQSPMYFFLNVLSFLDICYSSVVTPKLLVNFLVSDKSISFEGCVVQLAFFV
VHVTAESFLLASMAYDRFLAICQPLHYGSIMTRGTCLQLVAVSYAFGGANSAIQTGNVFA
LPFCGPNXTHYYCDIPPLLHLACANTATARVVLYVFSALVTLLPAAVILTSYCLVLVAI
GRMRSVAGREKDLSTCASHFLAIAIFYGTVVFTYVQPHGSTNNTNGQVVSVFYTIIIPML
NPFIYSLRNKEVKGALQRKLQVNIFPG

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 57,633,948 57,633,948 SNP A/G rs636807 (DbSNP)
11 57,634,193 57,634,193 SNP A/G rs637770 (DbSNP)
11 57,633,885 57,633,885 SNP A/G rs55838210 (DbSNP)
11 57,634,346 57,634,346 SNP G/A rs61730400 (DbSNP)
11 57,634,041 57,634,041 SNP T/C rs61730453 (DbSNP)
11 57,634,625 57,634,625 SNP T/C rs61743110 (DbSNP)
11 57,866,476 57,866,476 SNP G/A 1000GP (CEU, CHBJPT)
11 57,866,721 57,866,721 SNP A/G 1000GP (CEU, CHBJPT)
11 100 -100 SNP C/G 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI)

Variations - CNVs

Chr Start End Type Sources
11 57,631,774 57,634,852 CopyNumber #139 (Waszak)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.