OR5BC1P Olfactory Receptor
| Gene Symbol | OR5BC1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | BC |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.12.14P, ORL3627 |
| External Ids | HGNC: 15272 GeneBank: AF399502, NG_004202 ORDB: ORL3627 |
| Build #39 labels | OR5BC1P |
| Chromosomal location | 11:58,317,640-58,318,473 (-) |
| Cluster | 11@58 |
| Synteny | CLIC#27 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5B12 | 64.77% | 176 |
| OR5B21 | 51.48% | 305 |
| OR5B3 | 47.59% | 311 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Mouse | Or5b120 | 65% | 293 |
| Orang | OR5B3P | 46% | 314 |
| Horse | OR5B12 | 50% | 311 |
| Chimp | OR5B21P | 51% | 306 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h10919_x_at |
| GNF Atlas2 | gnf1h10920_at |
Sequence information
| Nucleotide sequence |
CCACACTTTAGCTCCCATGATAGTGATCAGTTAGCATAATTTTGTGTTTTTTCATCATAG GTAACTCTCAGGATAATTCCCAAATGACTTTGATGGATAACATTTCAGAAGTGACAGAAT TCGTTCTCGTGGGGTTAACAGATGTCCTAGAGCTTCAGGTCCCTTTATTTATCATCTTTA CTGTCATTTATCTCACCACTCTGGTTGGGAACTTTGGGATGATCATGTTGATTCTGTTGG ACTCCCGGCTCCACATTCCCATGTACTTTTTCCTTGGCAAACTCTCTCTGGTGGACAGTG TTTGTCCTGCTAGTCACTGGCTCCTACATCTGTGGACTCTTTCAATCCTCCATCCATGTT GCTTTTACTTTCCATCTCTCCTTCTGTCATTCTAATGTGGTTAATCACTTTTTTTGTGAT ATTCCACCACTCTTAGCTCTTTCTTGCTCTGATATTTACGCACATGAGATTGTGCTCTTC ATATTGGCAGCATTTAATATCTTTTTCACTCTCTTGATTATCTTGAACTCTTATGTTTTT ATTTTTATTGCTATCCTGAGGATGCATTCAGCTGAGGGACAAAAGAAGGTCTTTTCCACC TGTGCCTATCACCTCACTACTGTTTCCATCTTCTATGGGACAATCACCTTTATGTACTTA CAGCCAAGTTCTGGTCATTCCATGGACACAGACAAAATCTCATCTGTGTTCTACACCATG GTCATCCCCATGCTTAACCCTCTAGTCTATAGCCTGAGGAACAAAGAAGTCCAGAGTGCA TTCAAGGTGGTTATTGGAAAAGCAAAGTCTTCATTGGGCTTAGCCTACTATTTA |
| Conceptual translation |
PHFSSHDSDQLXIILCFFIIGNSQDNSQMTLMDNISEVTEFVLVGLTDVLELQVPLFII FTVIYLTTLVGNFGMIMLILLDSRLHIPMYFFLGKLSLVD/C/VLLVTGSYICGLFQS SIHVAFTFHLSFCHSNVVNHFFCDIPPLLALSCSDIYAHEIVLFILAAFNIFFTLLIILN SYVFIFIAILRMHSAEGQKKVFSTCAYHLTTVSIFYGTITFMYLQPSSGHSMDTDKISSV FYTMVIPMLNPLVYSLRNKEVQSAFKVVIGKAKSSLGLAYYL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 11 | 58,085,155 | 58,085,155 | SNP | A/T | rs12270849 (DbSNP) | |
| 11 | 58,085,356 | 58,085,356 | SNP | A/G | rs7110650 (DbSNP) | |
| 11 | 58,085,483 | 58,085,483 | SNP | T/G | rs1938663 (DbSNP) | |
| 11 | 58,085,763 | 58,085,763 | SNP | C/G | rs1938662 (DbSNP) | |
| 11 | 58,085,774 | 58,085,774 | SNP | G/A | rs1938661 (DbSNP) | |
| 11 | 58,317,884 | 58,317,884 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 58,318,011 | 58,318,011 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 11 | 58,318,071 | 58,318,071 | SNP | T/C | 1000GP (CEU) | |
| 11 | 58,318,291 | 58,318,291 | SNP | C/G | 1000GP (CEU, CHBJPT) | |
| 11 | 58,318,302 | 58,318,302 | SNP | A/G | 1000GP (CEU, CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 125 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.