OR5BD1P Olfactory Receptor
| Gene Symbol | OR5BD1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | BD |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | ORL3515 |
| External Ids | HGNC: 14843 GeneBank: NG_002253 ORDB: ORL3515 |
| Build #39 labels | OR5BD1P |
| Chromosomal location | 11:57,945,555-57,946,471 (-) |
| Cluster | 11@58 |
| Synteny | CLIC#27 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5AZ1P | 50.54% | 279 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5AZ2 | 68% | 275 |
| Mouse | Or5g25 | 42% | 279 |
| Rat | Or5g25 | 42% | 282 |
| Cow | OR5AZ2 | 63% | 294 |
| Orang | OR5AZ1P | 50% | 286 |
| Horse | OR5AZ2 | 66% | 297 |
| Chimp | OR5AZ1P | 49% | 285 |
Sequence information
| Nucleotide sequence |
ATGCCAGCCTGGGCAATGAGAGAGAAACCCTGTAAAAAAAAAAAAAAACACTCCTCACTC CTCTTTGCTGTCTTCCTGCTGACCTACTCCGTGACTCTGGTGGGCAACCTGGGCATGACA GATCTGATCTGCCAATCTGCACCAGCTCTGCCCTCCACACCCCCATGTGCTTCCTCCTGA GCGTATTCTCCTTCCTAGACATCTGCAGTTCCTCCATGTGCACCCCAGGCTGCTGATCCA CTTTCTCACCACTAACCATCCATCTCCTTTGCAGGTGGTATAATCCAGATGGCCCTCATG ACCTTCTATGGCACAGGGGAATGTCTGCTGCTGGCCATCGTAGCCTATGACTGAGTTGTG GCCATTTGCCACCCTTTCCCCTAGCATATCATCATGTCCAAGGGGACTGTGTGCCCAGCT GGTGGTGGTTACCTCTGCTGTGGGGGTGCTCATTTCAGCTCTAGACAGGATGCATTCATC TCGCCCTACCGTGGCCTAACATCATTGATCATTACTATGTTCTGTTACATTCCCCACCCC CATGCTCCAACTGGCCTGCTCAGATGCCACTGTGGCCAACATGATCCTGTTTGTCTCTTC TGCCTTGATCACTATCCCTACCATCTCAGTCATCTTGGTCTCTTACACTTACATCCTGGT TAATCAGTGGGATGAGGTCCCTGGATGCCCAGTGCAAAGCTTTCTCCACTCGTGCCTCCC ACCTCACTGCTCACTGCCTGTTTTATGGGTTTGTGTTCCTTGTATACATTCCACCCAACC CTGAAATGGCCTCAGCCTATAACAAAATCCTCTTCACCGTTGTGATCCCCATGCTGAACC TCCTGGTCTAAGGCCTGAGAAATAAAGATGTCAAAGTCGGCTGGGTGCTGTGGCTCTTGC CTGTAACACCAGTACTT |
| Conceptual translation |
MPAWAMREKPCKKKKKHSSLLFAVFLLTYSVTLVGNLGMTDLICQS/TSSALHTPMCFL LSVFSFLDICSSS/VHPRLLIHFLTT/PSISFAGGIIQMALMTFYGTGECLLLAIVAY DXVAICHPFPXIIMSKG\CAQLVVVTSAVGVLISA/RQDAFISPYRG/NIIDHY/br/>YCSVTFPTPMLQLACSDATVANMILFVSSALITIPTISVILVSYTYILVN/V/MRSLD AQCKAFSTRASHLTAHCLFYGFVFLVYIPPNPEMASAYNKILFTVVIPMLNLLVXLRNK DVKVGWVLWLLPVTPVL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 57,713,906 | 57,713,905 | Ins(10) | -/TTTTTTTTTT | rs34535093 (DbSNP) | |
| 11 | 57,713,896 | 57,713,895 | Ins(2) | -/AA | rs3974379 (DbSNP) | |
| 11 | 57,713,901 | 57,713,900 | Ins(3) | -/TTT | rs72062999 (DbSNP) | |
| 11 | 57,713,908 | 57,713,907 | Ins(9) | -/GTTTTTTTT | rs58726211 (DbSNP) | |
| 11 | 57,713,909 | 57,713,908 | Ins(9) | -/GTTTTTTTT | rs72107590 (DbSNP) | |
| 11 | 57,713,912 | 57,713,911 | Ins(9) | -/TTTTTTTTT | rs35394544 (DbSNP) | |
| 11 | 57,713,911 | 57,713,910 | Ins(9) | -/TTTTTTTTT | rs10523002 (DbSNP) | |
| 11 | 57,713,903 | 57,713,902 | Ins(9) | -/TTTTTTTTT | rs10667707 (DbSNP) | |
| 11 | 57,713,781 | 57,713,781 | SNP | A/G | rs4245215 (DbSNP) | |
| 11 | 57,713,169 | 57,713,169 | SNP | A/G | rs11826642 (DbSNP) | |
| 11 | 57,713,346 | 57,713,346 | SNP | A/G | rs10792120 (DbSNP) | |
| 11 | 57,713,538 | 57,713,538 | SNP | A/T | rs4293137 (DbSNP) | |
| 11 | 57,713,899 | 57,713,899 | SNP | G/T | rs12792492 (DbSNP) | |
| 11 | 57,713,664 | 57,713,664 | SNP | T/C | rs1995884 (DbSNP) | |
| 11 | 57,713,903 | 57,713,904 | Ins(10) | -/TTTTTTTTT/TTTTTTTTTT | rs10636902 (DbSNP) | |
| 11 | 57,945,726 | 57,945,726 | SNP | A/G | 1000GP (CEU) | |
| 11 | 57,945,874 | 57,945,874 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 57,946,192 | 57,946,192 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 57,946,309 | 57,946,309 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 57,945,978 | 57,945,978 | SNP | C/A | 1000GP (CHBJPT) | |
| 11 | 57,946,104 | 57,946,104 | SNP | C/A | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.