OR5BE1P Olfactory Receptor
| Gene Symbol | OR5BE1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | BE |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-166, HsOR11.11.44P, ORL3578 |
| External Ids | HGNC: 15273 GeneBank: AF399352, BK004693, NG_004201 ORDB: ORL3578 |
| Build #39 labels | OR5BE1P |
| Chromosomal location | 11:56,082,801-56,083,736 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5F2P | 45.66% | 311 |
| OR5J1P | 49.2% | 311 |
| OR5J2 | 48.7% | 308 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5BE4 | 76% | 312 |
| Mouse | Or5be3 | 74% | 312 |
| Rat | Or5be3 | 75% | 312 |
| Cow | OR5BE5 | 77% | 312 |
| Orang | OR5E1P | 45% | 311 |
| Horse | OR5BE1 | 81% | 274 |
| Chimp | OR5J1 | 51% | 312 |
Sequence information
| Nucleotide sequence |
ATGGCTGACAGAAATGTCACTGTGATAACTGAATTCATCCTCCTGGGGTTGACTGATAAC CCTGAAATGAATGTTGTCCTTTCTGTGCTCTTTCTATTAATCTATCTCATTACTGTCTTG GGCAACTTTTGGATTATCATAATAATTCTGGCTAGTGCCCAACTCCATTCACCCATGTAC TTTTTCCTTAGCCAGTTGGCTTTCTTAGATTTCTGCTATTCTTCAGTCTTGATTCCTAAA ATGTTGGTGAATTACATAGCAGGACAGAAAGTCATCTCTTATCACGGTTGCCTCCTTCAG TATTCCTTTGTCAGCTTGTTCCTGACTACTGAATGCTTCCTCCTGGCTGCCATGGCATGT GATCGGTATCTCGCTGTTTGCCACCCACTTCACTACAAAGGTCTCATGACTCCTACTTTC TGAATCTATTTGGTGACTGTTTCTTACCTGCTGGGCTCTGTAAACTCCCTCACCCACCTG AGTAGCTTACTCAGTTTGTCTTTCTGTGGGTCCAATGTTATCAACCGTTATTTCTGTGAC ATTCCATTGCTCTTCCAACTCTCCTGTTCCAACACCCAACACAGTAAGATTTTATTTACT GTCCTTTCTGGAGCAACATCAGTGACTACCTTTTTGATAGTGGTTAGTTCCTATCTGGTA ATCCTACTCATTGTCCTGAAGATACATTCCACCAGGGGCAGAAATAAAGCCATATCCACA TGTGCCTCCCACCTAATGGTAGTGACTCTCTTCTACAGAACAGTGATATTTACTTATCTG GGAGCCAACCCTGGATACTCACAGGATAGACCCAAAATTCTGCCTGTGGAGTGCACACTT TTGTTGTCAATACTAAATCTTCTAATATATAGCGTGAGAAACAGAGAAGTCAAAGAAGCC ATAAAAATAATTATTAAGAGAAAAATACTTCCTCAG |
| Conceptual translation |
MADRNVTVITEFILLGLTDNPEMNVVLSVLFLLIYLITVLGNFWIIIIILASAQLHSPMY FFLSQLAFLDFCYSSVLIPKMLVNYIAGQKVISYHGCLLQYSFVSLFLTTECFLLAAMAC DRYLAVCHPLHYKGLMTPTFXYLVTVSYLLGSVNSLTHLSSLLSLSFCGSNVINRYFCD IPLLFQLSCSNTQHSKILFTVLSGATSVTTFLIVVSSYLVILLIVLKIHSTRGRNKAIST CASHLMVVTLFYRTVIFTYLGANPGYSQDRPKILPVECTLLLSILNLLIYSVRNREVKEA IKIIIKRKILPQ Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 55,851,022 | 55,851,022 | SNP | A/C | rs17530318 (DbSNP) | |
| 11 | 55,851,124 | 55,851,124 | SNP | C/T | rs17530360 (DbSNP) | |
| 11 | 55,850,448 | 55,850,448 | SNP | C/T | rs61887074 (DbSNP) | |
| 11 | 55,850,531 | 55,850,531 | SNP | C/T | rs7118155 (DbSNP) | |
| 11 | 55,850,561 | 55,850,561 | SNP | C/T | rs61734131 (DbSNP) | |
| 11 | 55,850,947 | 55,850,947 | SNP | C/T | rs1384090 (DbSNP) | |
| 11 | 56,082,972 | 56,082,972 | SNP | C/T | 1000GP (CEU) | |
| 11 | 56,083,000 | 56,083,000 | SNP | C/T | 1000GP (CEU) | |
| 11 | 56,083,055 | 56,083,055 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 56,083,471 | 56,083,471 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 56,083,546 | 56,083,546 | SNP | C/A | 1000GP (CEU) | |
| 11 | 56,083,648 | 56,083,648 | SNP | C/T | 1000GP (CEU) | |
| 11 | 56,083,165 | 56,083,165 | SNP | G/A | 1000GP (CHBJPT) | |
| 11 | 56,083,691 | 56,083,691 | SNP | C/A | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.