OR5BM1P Olfactory Receptor
| Gene Symbol | OR5BM1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | BM |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | ORL3106 |
| External Ids | HGNC: 14835 GeneBank: NG_004145 ORDB: ORL3106 |
| Build #39 labels | OR5BM1P |
| Chromosomal location | 3:98,052,893-98,053,818 (+) |
| Cluster | 3@98 |
| Synteny | CLIC#9 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5AC1P | 55.15% | 136 |
| OR5AC2 | 52.21% | 136 |
| OR5AC4P | 55.88% | 136 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5AC27 | 64% | 143 |
| Mouse | Or5ac20 | 47% | 179 |
| Rat | Or5ac20-ps | 47% | 179 |
| Cow | OR5AC29P | 61% | 143 |
| Orang | OR5CO1P | 88% | 109 |
| Horse | OR5AC35P | 54% | 141 |
| Chimp | OR5CO1P | 96% | 113 |
Sequence information
| Nucleotide sequence |
GTTAGTCATTGCCTATTAATTTGGTTAATCCTTTCTCCCCATTTAATTTGTTATTTAAAT AAAATTTATAATTTACTATTTAACTTATCACTTAAATTGAATCCAGATATTCAAAACACT GGCCATTCTTTCTACTATGATGTTTTTGTAATGTTTTATTCCACCTTGACTGTGATAGTC CCGTTTGTAATACCAAGAGGATCAGATCATTTTTTGTTCTAGAAAGATAAAAAAGTTCCT GAAAGAATGAGAAAATACACTTTTGAACCCAAAACAAAGTCTCATTTTCTAAGATTTTGG CATAAAATATACCGTGTACCTTTTGCTCTTAAAACACTTCGTTGTTAATACATTCAATTT TAAGGTACTTATGAGTGGCAGGCTATGGGACTAGTTAGTTCTTGTCTAGAATCTCCTCTA TAACCCTCAAGAAATAATATGTATTTTAAAAAAATCTTACCATTTTTTCAGTGTACAATA TACAATTTCTTACATTGATCCATTTATTAACTCATTAGTGATTTTGTGGTTTTCACTGCT TTTATACAAGCTTTTGCTTTTATGATCATCATAGTTTCTTATACCCAAGTCCTCTTTGCC TTACTGAAAAAGAATTCTGAGAAGGGCAGAAGCAAAAGCTTCCTCATGTGCAGTGCCCAC CTGCTCTCTGTCTCTTTGTTCTATAGCAGTGTCTTCTTCATGTATGGGTGCCCCAGGTCT GGCCCAGATTAACAGTGGAATGAAATGTATTTTCCGTTCTACATGATTATAATTCCTCTG CAGACTCCTTTATTTACAGTATGAAAAACAAAGAAGTTTTAGGTACACTTAGAACAATGA TAAAGAAATATTTTTGGAGAACACTTTCATAATTCTTTCCATTTCCTTTCTGTTAAAACA AATCGTAATAATTGTTTCTGTGTTTT |
| Conceptual translation |
VSHCLLIWLILSPHL\VIXKFIIYYLTYHLNXQIFKTLAILSTMMFLXFIPPXX SRLXQEDQIIFCSRKIKKFLKEXNTLLNPKQSLIFXFGIKYTVYLLLLKHFVVNTFN FKVLMSGRXMGLVSSCLESPLXSRNNMYFKKILPFFQCT\TISYIDPFINSLV/FV VFTAFIQAFAFMIIIVSYTQVLFALLKKNSEKGRSKSFLMCSAHLLSVSLFYSSVFFMYG CPRSGPDXWNEMYFPFYMIIIPLQTP/IYSMKNKEVLGTLRTMIKKYFWRTLSXFPF PFCXKSXLFLCF Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 3 | 97,771,810 | 97,771,810 | Del(1) | -/T | rs34309959 (DbSNP) | |
| 3 | 97,772,072 | 97,772,072 | SNP | A/C | rs6802201 (DbSNP) | |
| 3 | 97,772,184 | 97,772,184 | SNP | A/T | rs56083722 (DbSNP) | |
| 3 | 97,772,231 | 97,772,231 | SNP | C/T | rs72918461 (DbSNP) | |
| 3 | 97,772,624 | 97,772,624 | SNP | C/T | rs9826748 (DbSNP) | |
| 3 | 97,772,071 | 97,772,071 | SNP | C/T | rs6789767 (DbSNP) | |
| 3 | 97,772,635 | 97,772,635 | SNP | C/T | rs9878663 (DbSNP) | |
| 3 | 97,772,622 | 97,772,622 | SNP | C/T | rs12497216 (DbSNP) | |
| 3 | 97,771,983 | 97,771,983 | SNP | G/A | rs832096 (DbSNP) | |
| 3 | 97,772,007 | 97,772,007 | SNP | G/A | rs832095 (DbSNP) | |
| 3 | 97,771,827 | 97,771,827 | SNP | T/C | rs844259 (DbSNP) | |
| 3 | 98,052,983 | 98,052,983 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 3 | 98,053,139 | 98,053,139 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 3 | 98,053,163 | 98,053,163 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 3 | 98,053,340 | 98,053,340 | SNP | A/T | 1000GP (CEU, CHBJPT) | |
| 3 | 98,053,778 | 98,053,778 | SNP | C/T | 1000GP (CEU) | |
| 3 | 98,053,780 | 98,053,780 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 3 | 98,053,791 | 98,053,791 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 3 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 3 | 97,746,851 | 97,778,744 | CopyNumber | Variation_30179 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.