OR5BP1P Olfactory Receptor
| Gene Symbol | OR5BP1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | BP |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | ORL3520 |
| External Ids | HGNC: 15277 GeneBank: NG_004198 ORDB: ORL3520 |
| Build #39 labels | OR5BP1P |
| Chromosomal location | 11:57,055,700-57,056,133 (+) |
| Cluster | 11@57 |
| Synteny | CLIC#26 |
| Remarks | Disrupted by MIR repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5AK3P | 42.11% | 133 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5AP1 | 43% | 134 |
| Mouse | Or5ak4 | 45% | 133 |
| Rat | Or5ak4 | 44% | 133 |
| Cow | OR5AK29 | 44% | 132 |
| Orang | OR5AK3P | 44% | 133 |
| Horse | OR5AK33 | 43% | 132 |
| Chimp | OR8L2P | 92% | 129 |
Sequence information
| Nucleotide sequence |
CTAGGTATAATTTAATTTACATAGTGAAACAAGCCATTCTTAGGTATATTCCTTAGTTCT GTCTTCGAAAGTCTGCATCCTGTTAGCAGCTGGCGTAGTTGGTGGGATACTTAGCAGAAG GATTGTATGTGTGTCCTACTGTTTCACTGTCCTCCTCCAGGTCCAATGCCATCAATCACT TTTTCTGTAATAAATCCCTAGGGCTTGGTCTTTCATGCTACAACATTTATATCAGCACAG CAGTCCCTGCCTTTGCAGAGTTTGAGTGCTGCATTCATTGCCATATTTGGTCATCATGTT CTCCTGGACATATATCCTGGTTGCTATCAAGAGGATGTCCTCAGTGGGGAGAAAAGAATT GTCTATTTGTGTCTCCCACCTGAAAACTAGCACCATTTTTCATACAGCCCTCTTTTATGT GTACTTACAGCCTG |
| Conceptual translation |
FLVKVKKNXIFLSTAYHFFPTLSVNNNKFLXINNNFXXNLHSETSHSXYSLVLSS KVCILLA\AXVGYLAEGLYVCPTVSLSSSRSNAINHFFCNKSLGLGLSCYNIYISTAV PAFAEFE/LHSLPYLVIMFSWTYILVAIKRMSSVGRKELSICVSHLKTSTIFHTALFYV YLQP Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 56,823,213 | 56,823,212 | Ins(1) | -/G | rs35583619 (DbSNP) | |
| 11 | 56,823,431 | 56,823,431 | SNP | A/G | rs496761 (DbSNP) | |
| 11 | 56,823,250 | 56,823,250 | SNP | C/T | rs17151564 (DbSNP) | |
| 11 | 57,055,775 | 57,055,775 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 57,055,956 | 57,055,956 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.