OR5BT1P Olfactory Receptor
| Gene Symbol | OR5BT1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | BT |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR12.3.3P |
| External Ids | HGNC: 19629 GeneBank: NG_004300 |
| Build #39 labels | OR5BT1P |
| Chromosomal location | 12:48,385,351-48,386,305 (-) |
| Cluster | 12@49b |
| Synteny | CLIC#30 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5BJ1P | 46.15% | 299 |
| OR8S1 | 42.35% | 307 |
| OR8T1P | 45.82% | 299 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR8BJ4 | 59% | 302 |
| Mouse | Or8s2 | 43% | 318 |
| Rat | Or8s2 | 44% | 318 |
| Cow | OR5BJ2 | 64% | 302 |
| Orang | OR5BT2P | 77% | 302 |
| Horse | OR5BJ2 | 62% | 323 |
| Chimp | OR5BK2P | 49% | 297 |
Sequence information
| Nucleotide sequence |
ATGAATTAATTTGTGTTTCTGGGGCTGTCCAGTGCCCCACCCCCAGATCCAGACCCCACT CTTTGTGCTGTTCCTGGTGATTTATCTCCTGACCCTGATAGGGAATCTGATGATGCTGTT GGTAATCAATGCTGATTCTTGCCTCCGTACCCCCATGTAATTCTTCCTTGGACATTTTTT CTTCCTAGATATATGTTACTCCTCAGTCACTGCCCAAGATGCTGCAGAATTTCCTGTTTC ATAAAAACCTATCTTGGTGTGGGGTTATATCACCTAGAGTTTCTTTTTCATTTTTTCTTG GGGCACCAATGGCTGCTTGCTCTCTGCCATCACCTATGCCTGCTATGCTGCCATCTGCCA CCCTCTGCTCTCTACCATGGTCATGAACCGACCTCTCTGCACTGCAACGGTCAATGCAAC CAACAAGATGGGGTTTCTGAACTCACAAGTGAACAATCTTTGTATCCAAACTTGCAGTTC TGTGGTCCCAATATCATTCTCCACTTCAGTTATGAAACGGTCTTCACGCTTCCCTCTGTC CTGCACTGATCCCATGCTAACACCATTCTTCTATCTGGATCTATTGCATTTCTCAGACTT GTGACACTTCCTCTGAACCTCTTTGCTTACTCAAAAATTATGTTTGCCATTCTAGGTATT TCTTCCTCTGGGTGGCCAAGGCAAAACCTGTTACTCCCATCTCACCATGGTGCTTTTGTT CTATGGGACAGCTCTATTCAAGCACATCAGCCCACCTTTAGGATCAGTCCTGGAGCAAGC GGTCTCTATACAGTATGCACAATTTCATACTTGTATATTGTATAGAGGTGTGATCACATC CTTGCTGAACCTCCTCATCTATAGCTTCAAGAAACAGGAAGTGAAGGCTGTTCACTTTGA ACATAGGGAAAAATGGCATATGTGCCTGCAAATGGTCAAGGAGTAGTGAAAACAA |
| Conceptual translation |
MNXVFLGLS\PHPQIQTPLFVLFLVIYLLTLIGNLMMLLVINADSCLRTPMXFLGHF FFLDICYSSV//PKMLQNFLFHKNLSWCGVISPRVSFSFFLGAPM/CLLSAITYACY AAICHPLLSTMVMNRPLCTATVNATNKMGFLNSQVNNLCIQ/LQFCGPNIILHFSYETV FTLPSVLHXHANTILLSGSIAFLRLVTLPLNLFAYSKIMFAILGISSSG\QGKTCYSH LTMVLLFYGTALFKHISPPLGSVLEQAVSIQYAQFHTCILYRGVITSLLNLLIYSFKKQE VKAVHFEHREKWHMCLQMVKEXKQ Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 12 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI) | |
| 12 | 48,385,651 | 48,385,651 | SNP | C/T | 1000GP (CEU) | |
| 12 | 48,385,779 | 48,385,779 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 12 | 48,386,003 | 48,386,003 | SNP | C/G | 1000GP (CHBJPT) | |
| 12 | 48,779,562 | 48,779,562 | SNP | A/G | rs4579969 (DbSNP) | |
| 12 | 48,780,025 | 48,780,024 | Ins(1) | -/A | rs35220202 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 15 (Hasin) | |||
| 12 | 48,429,702 | 48,825,499 | CopyNumber | Variation_3888 (DGV) |
| 12 | 48,541,757 | 48,779,562 | CopyNumber | Variation_8729 (DGV) |
| 12 | 48,547,128 | 48,779,562 | CopyNumber | Variation_2983 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.