OR5D14 Olfactory Receptor
Gene Symbol | OR5D141 (View this gene in GeneCards) |
Family | 5 |
Subfamily | D |
Pseudogene | No |
CORP pseudogene probability score | 0.26 (functional) |
Aliases | OR11-150, OR11-141, HsOR11.11.27, ORL3426 |
External Ids | HGNC: 15281 GeneBank: AB065779, AF399523, BK004328, BK004393, NM_001004735 ORDB: ORL3426 |
Build #39 labels | OR5D14 |
Chromosomal location | 11:55,795,556-55,796,497 (+) |
Cluster | 11@56 |
Synteny | CLIC#26 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR5D16 | 68.47% | 314 |
OR5D18 | 71.06% | 311 |
OR5D3P | 64.63% | 311 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR5D18 | 73% | 311 |
Mouse | Or5d14 | 83% | 309 |
Rat | Or5d36 | 78% | 308 |
Cow | OR5D18 | 69% | 311 |
Orang | OR8D4 | 50% | 309 |
Horse | OR5D14P | 87% | 312 |
Chimp | OR5D18 | 71% | 311 |
Expression evidences
Source | Accession |
---|---|
mRNA | AB463969 |
Sequence information
Nucleotide sequence |
ATGATGATGGTTTTAAGGAATCTGAGCATGGAGCCCACCTTTGCCCTTTTAGGTTTCACA GATTACCCAAAGCTTCAGATTCCTCTCTTCCTTGTGTTTCTGCTCATGTATGTTATCACA GTGGTAGGAAACCTTGGGATGATCATAATAATCAAGATTAACCCCAAATTTCACACTCCT ATGTACTTTTTCCTTAGTCACCTCTCTTTTGTTGATTTTTGTTACTCTTCCATTGTCACT CCCAAGCTGCTTGAGAACTTGGTAATGGCAGATAAAAGCATCTTCTACTTTAGCTGCATG ATGCAGTACTTCCTGTCCTGCACTGCTGTGGTGACAGAGTCTTTCTTGCTGGCAGTGATG GCCTATGACCGCTTTGTGGCCATCTGCAATCCTCTGCTTTATACAGTGGCCATGTCACAG AGGCTCTGTGCCCTGCTGGTGGCTGGGTCATATCTCTGGGGCATGTTTGGCCCCTTGGTA CTCCTTTGTTATGCTCTCCGGTTAAACTTCTCTGGACCTAATGTAATCAACCACTTCTTT TGTGAGTATACTGCTCTCATCTCTGTGTCTGGCTCTGATATACTCATCCCCCACCTGCTG CTTTTCAGCTTCGCCACCTTCAATGAGATGTGTACACTACTGATCATCCTCACTTCCTAT GTTTTCATTTTTGTGACTGTACTAAAAATCCGTTCTGTTAGTGGGCGCCACAAAGCCTTC TCCACCTGGGCCTCCCACCTGACTTCTATCACCATCTTCCATGGGACCATCCTTTTCCTT TACTGTGTACCCAACTCCAAAAACTCTCGGCAAACAGTCAAAGTGGCCTCTGTATTTTAC ACAGTTGTCAACCCCATGCTGAACCCTCTGATCTACAGCCTAAGGAATAAAGACGTGAAG GATGCTTTCTGGAAGTTAATACATACACAAGTTCCATTTCAC |
Conceptual translation |
MMMVLRNLSMEPTFALLGFTDYPKLQIPLFLVFLLMYVITVVGNLGMIIIIKINPKFHTP MYFFLSHLSFVDFCYSSIVTPKLLENLVMADKSIFYFSCMMQYFLSCTAVVTESFLLAVM AYDRFVAICNPLLYTVAMSQRLCALLVAGSYLWGMFGPLVLLCYALRLNFSGPNVINHFF CEYTALISVSGSDILIPHLLLFSFATFNEMCTLLIILTSYVFIFVTVLKIRSVSGRHKAF STWASHLTSITIFHGTILFLYCVPNSKNSRQTVKVASVFYTVVNPMLNPLIYSLRNKDVK DAFWKLIHTQVPFH Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 55,563,910 | 55,563,910 | Del(1) | -/C | rs35371580 (DbSNP) | |
11 | 55,563,846 | 55,563,846 | NS | A/C | K/T | rs61896310 (DbSNP) |
11 | 55,563,761 | 55,563,761 | NS | A/G | T/A | rs61896309 (DbSNP) |
11 | 55,563,738 | 55,563,738 | NS | A/G | H/R | rs67863827 (DbSNP) |
11 | 55,563,602 | 55,563,602 | NS | A/G | S/G | rs68042892 (DbSNP) |
11 | 55,563,900 | 55,563,900 | NS | C/T | P/L | rs297055 (DbSNP) |
11 | 55,563,128 | 55,563,128 | NS | G/T | V/F | rs12800529 (DbSNP) |
11 | 55,563,144 | 55,563,144 | NS | G/T | G/V | rs12800541 (DbSNP) |
11 | 55,563,126 | 55,563,126 | NS | G/T | G/V | rs12800526 (DbSNP) |
11 | 55,563,776 | 55,563,776 | NS | G/T | A/S | rs297054 (DbSNP) |
11 | 55,563,085 | 55,563,085 | SYN | G/T | G/G | rs12800499 (DbSNP) |
11 | 55,796,300 | 55,796,300 | NS | T/G | S/A | 1000GP (CEU) |
11 | 55,796,262 | 55,796,262 | NS | G/A | R/H | 1000GP (CEU, CHBJPT) |
11 | 55,796,370 | 55,796,370 | NS | C/A | T/K | 1000GP (CEU) |
11 | 55,795,860 | 55,795,860 | NS | A/T | Q/L | 1000GP (CEU, CHBJPT) |
11 | 55,796,424 | 55,796,424 | NS | T/C | L/P | 1000GP (CEU, CHBJPT) |
11 | 55,796,126 | 55,796,126 | NS | G/A | G/S | 1000GP (CEU, CHBJPT) |
11 | 55,796,285 | 55,796,285 | NS | G/A | A/T | 1000GP (CEU) |
11 | 100 | -100 | NS | A/G | M/V | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
11 | 55,475,356 | 55,563,900 | CopyNumber | Variation_1244 (DGV) |
11 | 55,446,295 | 55,618,623 | CopyNumber | Variation_2167 (DGV) |
11 | 55,339,702 | 55,638,112 | CopyNumber | Variation_2926 (DGV) |
11 | 55,222,420 | 55,621,884 | CopyNumber | Variation_3852 (DGV) |
11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
11 | 55,445,294 | 55,620,699 | CopyNumber | Variation_9187 (DGV) |
11 | 55,377,006 | 55,620,699 | CopyNumber | Variation_9188 (DGV) |
11 | 55,422,586 | 55,596,313 | CopyNumber | Variation_10360 (DGV) |
11 | 55,422,585 | 55,596,313 | CopyNumber | Variation_29911 (DGV) |
11 | 55,463,782 | 55,584,109 | CopyNumber | Variation_48056 (DGV) |
11 | 55,437,126 | 55,596,313 | CopyNumber | Variation_48840 (DGV) |
11 | 55,442,368 | 55,596,313 | CopyNumber | Variation_48841 (DGV) |
11 | 55,444,868 | 55,591,047 | CopyNumber | Variation_48842 (DGV) |
11 | 55,444,868 | 55,596,313 | CopyNumber | Variation_48843 (DGV) |
11 | 55,447,427 | 55,596,313 | CopyNumber | Variation_53429 (DGV) |
11 | 55,422,345 | 55,603,590 | CopyNumber | Variation_65956 (DGV) |
11 | 55,560,070 | 55,602,798 | CopyNumber | Variation_85785 (DGV) |
11 | 55,562,932 | 55,565,973 | Deletion | #289 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
M2V | F64V | Q102L | V111M | G191S | R236H | W243C | A244T | S249A | T272K | L290P | V299M | % Freq | CORP | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | M | F | Q | V | G | R | W | A | A | T | L | V | 47.16 | 0.429 |
2 | M | F | Q | V | G | R | W | A | A | T | P | V | 22.04 | 0.429 |
3 | M | F | L | V | G | R | W | A | A | T | L | V | 13.59 | 0.840 |
4 | M | F | Q | V | S | H | W | A | A | T | L | V | 10.14 | 0.383 |
5 | M | F | Q | V | G | R | W | T | A | K | L | V | 2.53 | 0.429 |
6 | M | F | Q | V | G | R | W | A | S | T | L | V | 2.07 | 0.490 |
7 | V | F | Q | V | G | R | W | A | S | T | L | V | 0.69 | 0.490 |
8 | M | F | Q | V | S | R | C | A | A | T | L | V | 0.61 | 0.191 |
9 | M | F | Q | V | S | R | W | A | A | T | L | M | 0.15 | 0.429 |
10 | M | F | Q | V | G | R | W | T | A | T | P | V | 0.15 | 0.429 |
11 | M | F | Q | M | G | R | W | A | A | T | L | V | 0.15 | 0.429 |
12 | M | F | Q | V | G | R | W | A | A | K | L | V | 0.15 | 0.429 |
13 | V | F | Q | V | G | R | W | A | A | T | L | V | 0.08 | 0.429 |
14 | M | F | Q | V | S | H | W | T | A | K | L | V | 0.08 | 0.383 |
15 | M | F | L | V | G | H | W | A | A | T | L | V | 0.08 | 0.813 |
16 | M | V | L | V | G | R | W | A | A | T | L | V | 0.08 | 0.951 |
17 | V | F | Q | V | G | R | W | A | A | T | P | V | 0.08 | 0.429 |
18 | M | F | L | V | G | R | W | A | A | T | P | V | 0.08 | 0.840 |
19 | M | V | Q | V | G | R | W | A | A | T | L | V | 0.08 | 0.737 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR5D14.aApr07-unspliced | main_exon | CDS | chr11 | 55,795,556 | 55,796,497 | + |
3UTR | chr11 | 55,796,497 | 55,796,500 | + |