OR5D16 Olfactory Receptor
| Gene Symbol | OR5D161 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | D |
| Pseudogene | No |
| CORP pseudogene probability score | 0.77 (pseudogene) |
| Aliases | OR11-154, HsOR11.11.31, ORL3392 |
| External Ids | HGNC: 15283 GeneBank: AB065783, AF399524, BK004397, NM_001005496 ORDB: ORL3392 |
| Build #39 labels | OR5D16 |
| Chromosomal location | 11:55,838,752-55,839,735 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5D18 | 80.77% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5D18 | 81% | 312 |
| Mouse | Or5d16 | 82% | 312 |
| Rat | Or5d16-ps | 83% | 312 |
| Cow | OR5D18 | 78% | 312 |
| Orang | OR5G3 | 49% | 314 |
| Horse | OR5D18C | 79% | 312 |
| Chimp | OR5D16P | 94% | 318 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB463970 |
Sequence information
| Nucleotide sequence |
ATGTTTCTGACAGAGAGAAATACGACATCTGAGGCCACATTCACTCTCTTGGGCTTCTCA GATTACCTGGAACTGCAAATTCCCCTCTTCTTTGTATTTCTGGCAGTCTACGGCTTCAGT GTGGTAGGGAATCTTGGGATGATAGTGATCATCAAAATTAACCCAAAATTGCATACCCCC ATGTATTTTTTCCTCAACCACCTCTCCTTTGTGGATTTCTGCTATTCCTCCATCATTGCT CCCATGATGCTGGTGAACCTGGTTGTAGAAGATAGAACCATTTCATTCTCAGGATGTTTG GTGCAATTCTTTTTCTTTTGCACCTTTGTAGTGACTGAATTAATTCTATTTGCGGTGATG GCCTATGACCACTTTGTGGCCATTTGCAATCCTCTGCTCTACACAGTTGCCATCTCCCAG AAACTCTGTGCCATGCTGGTGGTTGTATTGTATGCATGGGGAGTCGCATGTTCCCTGACA CTCGCGTGCTCTGCTTTAAAGTTATCTTTTCATGGTTTCAACACAATCAATCATTTCTTC TGTGAGTTATCCTCCCTGATATCACTCTCTTACCCTGACTCTTATCTCAGCCAGTTGCTT CTTTTCACTGTTGCCACTTTTAATGAGATAAGCACACTACTCATCATTCTGACATCTTAT GCATTCATCATTGTCACCACCTTGAAGATGCCTTCAGCCAGTGGGCACCGCAAAGTCTTC TCCACCTGTGCCTCCCACCTGACTGCCATCACCATCTTCCATGGCACCATCCTCTTCCTC TACTGTGTACCCAACTCCAAAAACTCCAGGCACACAGTCAAAGTGGCCTCTGTGTTTTAC ACCGTGGTGATCCCCTTGTTGAATCCCCTGATCTACAGTCTGAGAAATAAAGATGTTAAG GATGCAATCCGAAAAATAATCAATACAAAATATTTTCATATTAAACATAGGCATTGGTAT CCATTTAATTTTGTTATTGAACAA |
| Conceptual translation |
MFLTERNTTSEATFTLLGFSDYLELQIPLFFVFLAVYGFSVVGNLGMIVIIKINPKLHTP MYFFLNHLSFVDFCYSSIIAPMMLVNLVVEDRTISFSGCLVQFFFFCTFVVTELILFAVM AYDHFVAICNPLLYTVAISQKLCAMLVVVLYAWGVACSLTLACSALKLSFHGFNTINHFF CELSSLISLSYPDSYLSQLLLFTVATFNEISTLLIILTSYAFIIVTTLKMPSASGHRKVF STCASHLTAITIFHGTILFLYCVPNSKNSRHTVKVASVFYTVVIPLLNPLIYSLRNKDVK DAIRKIINTKYFHIKHRHWYPFNFVIEQ Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 55,606,693 | 55,606,693 | NS | A/G | T/A | rs6591700 (DbSNP) |
| 11 | 55,607,207 | 55,607,207 | NS | A/G | E/G | rs11820541 (DbSNP) |
| 11 | 55,607,203 | 55,607,203 | NS | A/T | I/F | rs62001004 (DbSNP) |
| 11 | 55,606,472 | 55,606,472 | NS | C/T | T/M | rs62001008 (DbSNP) |
| 11 | 55,607,057 | 55,607,057 | NS | C/T | S/F | rs61896326 (DbSNP) |
| 11 | 55,607,097 | 55,607,097 | SYN | A/G | L/L | rs62001005 (DbSNP) |
| 11 | 55,606,818 | 55,606,818 | SYN | C/T | S/S | rs11231253 (DbSNP) |
| 11 | 55,606,302 | 55,606,302 | SYN | G/T | L/L | rs6591699 (DbSNP) |
| 11 | 55,839,581 | 55,839,581 | NS | C/T | S/F | 1000GP (CEU) |
| 11 | 55,838,826 | 55,838,826 | SYN | G/T | L/L | 1000GP (CEU, CHBJPT) |
| 11 | 55,839,342 | 55,839,342 | SYN | C/T | S/S | 1000GP (CEU, CHBJPT) |
| 11 | 55,839,217 | 55,839,217 | NS | G/A | A/T | 1000GP (CEU) |
| 11 | 55,838,996 | 55,838,996 | NS | T/C | M/T | 1000GP (CEU) |
| 11 | 100 | -100 | SYN | G/T | L/L | 1000GP (YRI, YRI, YRI) |
| 11 | 100 | -100 | NS | G/A | A/T | 1000GP (YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
| 11 | 55,446,295 | 55,618,623 | CopyNumber | Variation_2167 (DGV) |
| 11 | 55,339,702 | 55,638,112 | CopyNumber | Variation_2926 (DGV) |
| 11 | 55,222,420 | 55,621,884 | CopyNumber | Variation_3852 (DGV) |
| 11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
| 11 | 55,445,294 | 55,620,699 | CopyNumber | Variation_9187 (DGV) |
| 11 | 55,377,006 | 55,620,699 | CopyNumber | Variation_9188 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| M82T | A156T | A162T | S277F | N296S | E327G | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|
| 1 | M | A | A | S | N | E | 79.42 | 0.896 |
| 2 | M | T | A | S | N | E | 12.75 | 0.896 |
| 3 | M | A | A | F | N | E | 4.38 | 0.896 |
| 4 | T | A | A | S | N | E | 2.15 | 0.896 |
| 5 | M | A | A | S | N | G | 0.77 | 0.896 |
| 6 | M | A | A | S | S | E | 0.38 | 0.896 |
| 7 | T | A | T | S | N | E | 0.08 | 0.896 |
| 8 | M | T | A | F | N | E | 0.08 | 0.896 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR5D16.aApr07-unspliced | main_exon | CDS | chr11 | 55,838,752 | 55,839,735 | + |
| 3UTR | chr11 | 55,839,735 | 55,839,738 | + | ||