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(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR5D17P Olfactory Receptor

Gene Symbol OR5D17P1 (View this gene in GeneCards)
Family 5
Subfamily D
Pseudogene Yes
CORP pseudogene probability score
Aliases OR11-147, OR11-132, HsOR11.11.24P, ORL3545
External Ids HGNC: 15284   GeneBank: BK004595, BK004761, NG_004194   ORDB: ORL3545   
Build #39 labels OR5D17P
Chromosomal location 11:55,754,977-55,755,954 (+)
Cluster 11@56
Synteny CLIC#26
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR5D15P 68.28% 309
OR5D2P 67.76% 304
OR5D3P 68.98% 303

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR5D17 85% 312
Mouse Or5d20-ps 80% 309
Rat Or5d20 78% 309
Cow OR5D79 75% 310
Orang OR8D4 47% 305
Horse OR5D17 83% 307
Horse OR5D17B 80% 311
Horse OR5D17C 80% 310
Chimp OR5D17 96% 316

Sequence information

Nucleotide sequence TTCTGTCTCTCTCTCTTTTAGTGAAGGGCCTTGGTACCAGAAGAGAGAAACCAGAGCTCT
GTGACCACATTCATCCTGTTGGGTTTCTCAGAATATCCACACCTCCAGGCGCCCCTCTTC
CTGGTGTTCTCGACCACCTACACTGTCGCTCTGGTGGGAAACCTGGGCATAATTGTGGTT
GTAAGAATCAATCCTAAGCTCCATACCACCATGTACTTTTTCCTCAGTCATCTATCCTTT
TTGGATACTTGTTATTCCAATGTATTTACACCCAAACTGTTAGAGATTTTGGTTGTGGAA
GACAGAACTATCTCCTTCAAAGGATGCATGGTACAATTTTTCTTTGGTTGTGCATTTGTA
ATCACAGAAATGTTCATGTTAGCGGTGATGGCTTATGACTTGTTTATGGCTGTTTGTAAC
CCCCTGCTCTACACAGTGGCTATGTCTCCTAAGCTCTGTGCTCTCCTGGTAACTGGAACT
TACACATGGGGTGGACTCTGTTCCCTGACACTCACTTATTCTCTTTTGGTGTTATCCTAC
TGTGGATCTAACATCATAAATCACTTTGGCTGTGAGTACTCTGCCATTCTTTCTCTATCC
TGCTCTGATCCCTACTTCAACCAGATGGCGTGTTTAGTCATTTCTATATTCAGTGAAGCT
TGTAGCCTCCTGGCCATCCTTGCCTTCTATGTCTTCATAGTTGCCACTGTCATCAAGATG
CTTTCTACGGGTGGACCCCAAAAGGCCATCTCCACCTGTGCCTCCCACCTGACCACCGTC
TCCATTTTCCATGGGGTCATCCTGCTCCTTTACTGTGTGCCCAACTCCAAAAGCTCATGG
CTCCTGGTCAAAGTGGCTACTGTACTTTTTACAGTCATAATCCCTATGCTGAATCCCCTG
ATCTACAGCCTTAGGAACAAAGATGTAAAAGAGACCGTCAGGAAGTTGATAAACTCCCAA
TCACCTTTTCACTCAAAA
Conceptual translation FCLSLFXRALVPEERNQSSVTTFILLGFSEYPHLQAPLFLVFSTTYTVALVGNLGIIVV
VRINPKLHTTMYFFLSHLSFLDTCYSNVFTPKLLEILVVEDRTISFKGCMVQFFFGCAFV
ITEMFMLAVMAYDLFMAVCNPLLYTVAMSPKLCALLVTGTYTWGGLCSLTLTYSLLVLSY
CGSNIINHFGCEYSAILSLSCSDPYFNQMACLVISIFSEACSLLAILAFYVFIVATVIKM
LSTGGPQKAISTCASHLTTVSIFHGVILLLYCVPNSKSSWLLVKVATVLFTVIIPMLNPL
IYSLRNKDVKETVRKLINSQSPFHSK

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 55,522,481 55,522,481 SNP A/C rs10897205 (DbSNP)
11 55,522,959 55,522,959 SNP A/G rs35731916 (DbSNP)
11 55,523,181 55,523,181 SNP A/G rs61743281 (DbSNP)
11 55,523,384 55,523,384 SNP A/G rs438025 (DbSNP)
11 55,522,480 55,522,480 SNP A/G rs12785720 (DbSNP)
11 55,523,230 55,523,230 SNP A/G rs61745714 (DbSNP)
11 55,522,498 55,522,498 SNP A/G rs12790205 (DbSNP)
11 55,523,082 55,523,082 SNP A/G rs61740601 (DbSNP)
11 55,523,072 55,523,072 SNP A/G rs61740598 (DbSNP)
11 55,522,968 55,522,968 SNP A/T rs61746665 (DbSNP)
11 55,522,780 55,522,780 SNP A/T rs61743273 (DbSNP)
11 55,522,483 55,522,483 SNP A/T rs11827779 (DbSNP)
11 55,523,397 55,523,397 SNP C/G rs67874622 (DbSNP)
11 55,523,047 55,523,047 SNP C/G rs61740597 (DbSNP)
11 55,522,979 55,522,979 SNP C/T rs61746670 (DbSNP)
11 55,522,583 55,522,583 SNP C/T rs382150 (DbSNP)
11 55,522,549 55,522,549 SNP C/T rs11230864 (DbSNP)
11 55,522,527 55,522,527 SNP C/T rs11826346 (DbSNP)
11 55,522,572 55,522,572 SNP C/T rs61744680 (DbSNP)
11 55,522,729 55,522,729 SNP C/T rs393009 (DbSNP)
11 55,522,666 55,522,666 SNP C/T rs61739480 (DbSNP)
11 55,522,732 55,522,732 SNP C/T rs61740656 (DbSNP)
11 55,523,410 55,523,410 SNP C/T rs67491981 (DbSNP)
11 55,523,174 55,523,174 SNP C/T rs61743277 (DbSNP)
11 55,522,739 55,522,739 SNP C/T rs61740659 (DbSNP)
11 55,523,138 55,523,138 SNP C/T rs61743263 (DbSNP)
11 55,522,924 55,522,924 SNP G/A rs443028 (DbSNP)
11 55,522,664 55,522,664 SNP G/T rs11827814 (DbSNP)
11 55,522,798 55,522,798 SNP G/T rs61743283 (DbSNP)
11 55,755,004 55,755,004 SNP G/A 1000GP (CEU, CHBJPT)
11 55,755,005 55,755,005 SNP C/A 1000GP (CEU, CHBJPT)
11 55,755,007 55,755,007 SNP T/A 1000GP (CEU, CHBJPT)
11 55,755,022 55,755,022 SNP A/G 1000GP (CEU, CHBJPT)
11 55,755,051 55,755,051 SNP C/T 1000GP (CEU, CHBJPT)
11 55,755,073 55,755,073 SNP C/T 1000GP (CEU, CHBJPT)
11 55,755,107 55,755,107 SNP C/T 1000GP (CEU, CHBJPT)
11 55,755,188 55,755,188 SNP T/G 1000GP (CEU, CHBJPT)
11 55,755,253 55,755,253 SNP C/T 1000GP (CEU, CHBJPT)
11 55,755,263 55,755,263 SNP T/C 1000GP (CEU, CHBJPT)
11 55,755,304 55,755,304 SNP A/T 1000GP (CEU, CHBJPT)
11 55,755,448 55,755,448 SNP A/G 1000GP (CEU, CHBJPT)
11 55,755,483 55,755,483 SNP G/A 1000GP (CEU, CHBJPT)
11 55,755,492 55,755,492 SNP T/A 1000GP (CEU, CHBJPT)
11 55,755,571 55,755,571 SNP C/G 1000GP (CEU, CHBJPT)
11 55,755,596 55,755,596 SNP A/G 1000GP (CEU, CHBJPT)
11 55,755,606 55,755,606 SNP G/A 1000GP (CEU, CHBJPT)
11 55,755,662 55,755,662 SNP T/C 1000GP (CEU, CHBJPT)
11 55,755,698 55,755,698 SNP T/C 1000GP (CEU, CHBJPT)
11 55,755,705 55,755,705 SNP G/A 1000GP (CEU, CHBJPT)
11 55,755,754 55,755,754 SNP G/A 1000GP (CEU, CHBJPT)
11 55,755,908 55,755,908 SNP A/G 1000GP (CEU)
11 55,755,921 55,755,921 SNP G/C 1000GP (CEU, CHBJPT)
11 55,755,934 55,755,934 SNP C/T 1000GP (CEU, CHBJPT)
11 100 -100 SNP G/A 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI)

Variations - CNVs

Chr Start End Type Sources
11 55,153,930 55,816,828 CopyNumber Variation_0308 (DGV)
11 55,475,356 55,563,900 CopyNumber Variation_1244 (DGV)
11 55,446,295 55,618,623 CopyNumber Variation_2167 (DGV)
11 55,339,702 55,638,112 CopyNumber Variation_2926 (DGV)
11 55,222,420 55,621,884 CopyNumber Variation_3852 (DGV)
11 55,382,681 55,548,038 CopyNumber Variation_4743 (DGV)
11 54,835,623 55,879,426 CopyNumber Variation_8690 (DGV)
11 55,445,294 55,620,699 CopyNumber Variation_9187 (DGV)
11 55,377,006 55,620,699 CopyNumber Variation_9188 (DGV)
11 55,422,586 55,596,313 CopyNumber Variation_10360 (DGV)
11 55,422,585 55,596,313 CopyNumber Variation_29911 (DGV)
11 55,460,683 55,547,092 CopyNumber Variation_38236 (DGV)
11 55,463,782 55,584,109 CopyNumber Variation_48056 (DGV)
11 55,437,126 55,596,313 CopyNumber Variation_48840 (DGV)
11 55,442,368 55,596,313 CopyNumber Variation_48841 (DGV)
11 55,444,868 55,591,047 CopyNumber Variation_48842 (DGV)
11 55,444,868 55,596,313 CopyNumber Variation_48843 (DGV)
11 55,447,427 55,596,313 CopyNumber Variation_53429 (DGV)
11 55,422,345 55,603,590 CopyNumber Variation_65956 (DGV)
11 55,523,241 55,526,896 CopyNumber Variation_75648 (DGV)
11 55,521,157 55,522,913 CopyNumber Variation_85782 (DGV)
11 55,521,787 55,522,913 CopyNumber Variation_85783 (DGV)
11 55,523,241 55,558,796 CopyNumber Variation_85784 (DGV)
11 55,522,353 55,525,430 Deletion #298 (Waszak)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.

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