OR5D18 Olfactory Receptor
Gene Symbol | OR5D181 (View this gene in GeneCards) |
Family | 5 |
Subfamily | D |
Pseudogene | No |
CORP pseudogene probability score | |
Aliases | OR11-143, OR11-152, HsOR11.11.29, ORL3394, ORL3395 |
External Ids | HGNC: 15285 GeneBank: AB065781, AF399525, BK004329, BK004395, NM_001001952 ORDB: ORL3394, ORL3395 |
Build #39 labels | OR5D18 |
Chromosomal location | 11:55,819,630-55,820,568 (+) |
Cluster | 11@56 |
Synteny | CLIC#26 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR5D16 | 80.77% | 312 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR5D14 | 72% | 306 |
Mouse | Or5d18 | 82% | 312 |
Mouse | Or5d16 | 81% | 313 |
Rat | Or5d18 | 82% | 312 |
Rat | Or5d16-ps | 80% | 313 |
Cow | OR5D76P | 77% | 312 |
Orang | OR9S18 | 55% | 296 |
Horse | OR5D18C | 83% | 313 |
Horse | OR5D18D | 82% | 309 |
Horse | OR5D18EP | 84% | 301 |
Horse | OR5D18B | 82% | 309 |
Chimp | OR5D16P | 80% | 312 |
Expression evidences
Source | Accession |
---|---|
mRNA | BC136925 |
Sequence information
Nucleotide sequence |
ATGCTGCTGACTGATAGAAATACAAGTGGGACCACGTTCACCCTCTTGGGCTTCTCAGAT TACCCAGAACTGCAAGTCCCACTCTTCCTGGTTTTTCTGGCCATCTACAATGTCACTGTG CTAGGGAATATTGGGTTGATTGTGATCATCAAAATCAACCCCAAACTGCATACCCCCATG TACTTTTTCCTCAGCCAACTCTCCTTTGTGGATTTCTGCTATTCCTCCATCATTGCTCCC AAGATGTTGGTGAACCTTGTTGTCAAAGACAGAACCATTTCATTTTTAGGATGCGTAGTA CAATTCTTTTTCTTCTGTACCTTTGTGGTCACTGAATCCTTTTTATTAGCTGTGATGGCC TATGACCGCTTCGTGGCCATTTGCAACCCTCTGCTCTACACAGTTAACATGTCCCAGAAA CTCTGCGTGCTGCTGGTTGTGGGATCCTATGCCTGGGGAGTCTCATGTTCCTTGGAACTG ACGTGCTCTGCTTTAAAGTTATGTTTTCATGGTTTCAACACAATCAATCACTTCTTCTGT GAGTTCTCCTCACTACTCTCCCTTTCTTGCTCTGATACTTACATCAACCAGTGGCTGCTA TTCTTTCTTGCCACCTTTAATGAAATCAGCACACTACTCATCGTTCTCACATCTTATGCG TTCATTGTTGTAACCATCCTCAAGATGCGTTCAGTCAGTGGGCGCCGCAAAGCCTTCTCC ACCTGTGCCTCCCACCTGACTGCCATCACCATCTTCCATGGCACCATCCTCTTCCTTTAC TGTGTGCCCAACTCCAAAAACTCCAGGCACACAGTCAAAGTGGCCTCTGTGTTTTACACC GTGGTGATCCCCATGTTGAATCCCCTGATCTACAGTCTGAGAAATAAAGATGTCAAGGAT ACAGTCACCGAGATACTGGACACCAAAGTCTTCTCTTAC |
Conceptual translation |
MLLTDRNTSGTTFTLLGFSDYPELQVPLFLVFLAIYNVTVLGNIGLIVIIKINPKLHTPM YFFLSQLSFVDFCYSSIIAPKMLVNLVVKDRTISFLGCVVQFFFFCTFVVTESFLLAVMA YDRFVAICNPLLYTVNMSQKLCVLLVVGSYAWGVSCSLELTCSALKLCFHGFNTINHFFC EFSSLLSLSCSDTYINQWLLFFLATFNEISTLLIVLTSYAFIVVTILKMRSVSGRRKAFS TCASHLTAITIFHGTILFLYCVPNSKNSRHTVKVASVFYTVVIPMLNPLIYSLRNKDVKD TVTEILDTKVFSY Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 55,587,914 | 55,587,914 | NS | A/G | H/R | rs55832853 (DbSNP) |
11 | 55,587,212 | 55,587,212 | NS | A/G | Y/C | rs7948629 (DbSNP) |
11 | 55,587,457 | 55,587,457 | NS | A/G | M/V | rs11231180 (DbSNP) |
11 | 55,587,827 | 55,587,827 | NS | C/T | T/I | rs55843616 (DbSNP) |
11 | 55,587,587 | 55,587,587 | NS | C/T | T/M | rs62001009 (DbSNP) |
11 | 55,587,511 | 55,587,511 | NS | G/A | D/N | rs297081 (DbSNP) |
11 | 55,587,117 | 55,587,117 | SYN | A/T | T/T | rs297082 (DbSNP) |
11 | 55,587,120 | 55,587,120 | SYN | C/T | D/D | rs62001011 (DbSNP) |
11 | 55,819,736 | 55,819,736 | NS | A/G | Y/C | 1000GP (CEU) |
11 | 55,820,035 | 55,820,035 | NS | A/G | N/D | 1000GP (CEU, CHBJPT) |
11 | 55,819,728 | 55,819,728 | SYN | G/T | L/L | 1000GP (CEU) |
11 | 55,820,438 | 55,820,438 | NS | A/G | H/R | 1000GP (CEU, CHBJPT) |
11 | 55,819,641 | 55,819,641 | SYN | T/A | T/T | 1000GP (CEU) |
11 | 55,819,981 | 55,819,981 | NS | G/A | V/M | 1000GP (CHBJPT) |
11 | 100 | -100 | SYN | T/A | T/T | 1000GP (YRI, YRI) |
11 | 100 | -100 | NS | A/G | N/D | 1000GP (YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
11 | 55,446,295 | 55,618,623 | CopyNumber | Variation_2167 (DGV) |
11 | 55,339,702 | 55,638,112 | CopyNumber | Variation_2926 (DGV) |
11 | 55,222,420 | 55,621,884 | CopyNumber | Variation_3852 (DGV) |
11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
11 | 55,445,294 | 55,620,699 | CopyNumber | Variation_9187 (DGV) |
11 | 55,377,006 | 55,620,699 | CopyNumber | Variation_9188 (DGV) |
11 | 55,422,586 | 55,596,313 | CopyNumber | Variation_10360 (DGV) |
11 | 55,422,585 | 55,596,313 | CopyNumber | Variation_29911 (DGV) |
11 | 55,437,126 | 55,596,313 | CopyNumber | Variation_48840 (DGV) |
11 | 55,442,368 | 55,596,313 | CopyNumber | Variation_48841 (DGV) |
11 | 55,444,868 | 55,591,047 | CopyNumber | Variation_48842 (DGV) |
11 | 55,444,868 | 55,596,313 | CopyNumber | Variation_48843 (DGV) |
11 | 55,447,427 | 55,596,313 | CopyNumber | Variation_53429 (DGV) |
11 | 55,422,345 | 55,603,590 | CopyNumber | Variation_65956 (DGV) |
11 | 55,560,070 | 55,602,798 | CopyNumber | Variation_85785 (DGV) |
11 | 55,587,006 | 55,590,044 | Deletion | #291 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
Y36C | V118M | N136D | T161M | V215I | R230S | H270R | % Freq | CORP | |
---|---|---|---|---|---|---|---|---|---|
1 | Y | V | D | T | V | R | H | 69.20 | 0.040 |
2 | Y | V | D | T | V | R | R | 24.96 | 0.040 |
3 | C | V | D | T | V | R | H | 2.69 | 0.126 |
4 | Y | M | D | T | V | R | H | 1.77 | 0.040 |
5 | Y | V | D | M | V | R | H | 0.38 | 0.040 |
6 | Y | V | N | T | V | R | H | 0.38 | 0.040 |
7 | Y | V | D | T | I | R | R | 0.38 | 0.040 |
8 | C | V | D | T | V | R | R | 0.15 | 0.126 |
9 | Y | V | D | T | V | S | H | 0.08 | 0.040 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR5D18.aApr07-unspliced | main_exon | CDS | chr11 | 55,819,630 | 55,820,568 | + |
3UTR | chr11 | 55,820,568 | 55,820,571 | + |