OR5D2P Olfactory Receptor
Gene Symbol | OR5D2P1 (View this gene in GeneCards) |
Family | 5 |
Subfamily | D |
Pseudogene | Yes |
CORP pseudogene probability score | |
Aliases | OR11-7a, OR912-91, OR912-94, OR18-17, OR18-79, OR912-47, OR18-42, OR912-61, OR8-127, OR11-130, OR912-102, OR18-43, OR18-44, OR8-125, HsOR11.11.22P, ORL3482 |
External Ids | HGNC: 8335 GeneBank: AF065858, AF399362, BK004703, NG_002277, U86246, U86247, U86287, U86288, U86296-U86298 ORDB: ORL3482 |
Build #39 labels | OR5D2P, OR5D10P, OR5D5P, OR5D12P, OR5D11P |
Chromosomal location | 11:55,714,781-55,715,718 (+) |
Cluster | 11@56 |
Synteny | CLIC#26 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR5D3P | 85.67% | 314 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR5D3 | 82% | 286 |
Mouse | Or5d3-ps | 79% | 310 |
Rat | Or5d45-ps | 73% | 302 |
Cow | OR5D3P | 78% | 311 |
Orang | OR8D4 | 49% | 306 |
Horse | OR5D2 | 82% | 316 |
Chimp | OR5D3 | 86% | 286 |
Sequence information
Nucleotide sequence |
TCCCTATTTTGTCCCAGGGACCAAGAAAATCAGACTTCTGAAGTCACCTTCATCCTCTTG GGCTTCTCAGAATATCCAGACCTTCAGACGCCCCTGTTCCTGGTGTTCCTGACCATCTAC ACAGTCACTGTGCTGGGGAATCTGGGCATGATCATAGTCATCAGGATCAGCCCCAAACTC CACACCCCCATGTGCTTTTTCCTCAGCCACTTGTCCTTTGTTGATTTCTGTTATTCCACC ACAATTACACCCAAACTGCTGGAGAACTTGGTTGTGGAAGATAGAACTATCTCCTTCACA GGATGCACCATGCAGTTATTCTTTGTCTGCATATTTGTAGTAACAGAAACATTCATGCTG GCAGTGATGGCCTATGACCGATATGTGGCGGTGTGTAACCCTCTTCTCTACACAGTTGCA ATGTACCAGAGGCTTTGCTCCTTGTTAGTGGCTACATCATACTGTTGGGGGATAGTCTGT TCCCTGACACTTACCTAGTTTCTACTGGAATTATCCTTCAGAGGAAATAATATCATTAAT AACTTTGTCTGTGAGCACGCTGCCATTGTTGCTGTGTCTTGCTCTGACCCCTGTGTGAGC CAGGAGATCACTTTAGTTTCTGCCACATTCAATGAAATAAGCAGCCTGCTTCCTATGCTT TCATTTTTATCACTGTCATGAAGACGCCTTCCACTGGGGGGCGCAAGAAAGCGTTCTCCA CGTCTGCCTCCCACTTGACGGCCATTACCATTTTCCATGGGACTATCCTTTTCCTCTACT GTGTTCCTAACTCCAAAAGTTCGTGGCTCATGGTCAAGGTGGCCTCTGTCTTTTACACAG TGGTCATTCCCATGCTGAACCCCTTGATCTATAGCCTCAGGAACAAAGATGTAAAAGAGA CAGTTAGGAGGTTACTCATTACCAAATTATTATGTCTC |
Conceptual translation |
SLFCPRDQENQTSEVTFILLGFSEYPDLQTPLFLVFLTIYTVTVLGNLGMIIVIRISPKL HTPMCFFLSHLSFVDFCYSTTITPKLLENLVVEDRTISFTGCTMQLFFVCIFVVTETFML AVMAYDRYVAVCNPLLYTVAMYQRLCSLLVATSYCWGIVCSLTLTXLLELSFRGNNIIN NFVCEHAAIVAVSCSDPCVSQEITLVSATFNEISSL/SYAFIFITVMKTPSTGGRKKAF STSASHLTAITIFHGTILFLYCVPNSKSSWLMVKVASVFYTVVIPMLNPLIYSLRNKDVK ETVRRLLITKLLCL Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 55,482,905 | 55,482,904 | Ins(13) | -/GTGATCATTCTCA | rs71055527 (DbSNP) | |
11 | 55,482,906 | 55,482,905 | Ins(13) | -/GTGATCATTCTCA | rs72176723 (DbSNP) | |
11 | 55,482,571 | 55,482,571 | SNP | A/G | rs61742336 (DbSNP) | |
11 | 55,482,568 | 55,482,568 | SNP | A/G | rs61742335 (DbSNP) | |
11 | 55,482,450 | 55,482,450 | SNP | A/G | rs11821351 (DbSNP) | |
11 | 55,482,598 | 55,482,598 | SNP | A/G | rs61742350 (DbSNP) | |
11 | 55,482,646 | 55,482,646 | SNP | A/G | rs61744727 (DbSNP) | |
11 | 55,482,582 | 55,482,582 | SNP | C/T | rs61742341 (DbSNP) | |
11 | 55,482,355 | 55,482,355 | SNP | C/T | rs67966532 (DbSNP) | |
11 | 55,482,564 | 55,482,564 | SNP | C/T | rs61742334 (DbSNP) | |
11 | 55,482,621 | 55,482,621 | SNP | C/T | rs61742356 (DbSNP) | |
11 | 55,482,900 | 55,482,900 | SNP | G/T | rs12222348 (DbSNP) | |
11 | 55,714,879 | 55,714,879 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
11 | 55,714,974 | 55,714,974 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
11 | 55,715,059 | 55,715,059 | SNP | A/C | 1000GP (CEU) | |
11 | 55,715,088 | 55,715,088 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
11 | 55,715,480 | 55,715,480 | SNP | G/A | 1000GP (CEU) | |
11 | 55,715,670 | 55,715,670 | SNP | T/C | 1000GP (CEU) | |
11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
11 | 55,475,356 | 55,563,900 | CopyNumber | Variation_1244 (DGV) |
11 | 55,446,295 | 55,618,623 | CopyNumber | Variation_2167 (DGV) |
11 | 55,339,702 | 55,638,112 | CopyNumber | Variation_2926 (DGV) |
11 | 55,222,420 | 55,621,884 | CopyNumber | Variation_3852 (DGV) |
11 | 55,382,681 | 55,548,038 | CopyNumber | Variation_4743 (DGV) |
11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
11 | 55,445,294 | 55,620,699 | CopyNumber | Variation_9187 (DGV) |
11 | 55,377,006 | 55,620,699 | CopyNumber | Variation_9188 (DGV) |
11 | 55,422,586 | 55,596,313 | CopyNumber | Variation_10360 (DGV) |
11 | 55,422,585 | 55,596,313 | CopyNumber | Variation_29911 (DGV) |
11 | 55,432,955 | 55,495,323 | Inversion | Variation_37124 (DGV) |
11 | 55,460,683 | 55,547,092 | CopyNumber | Variation_38236 (DGV) |
11 | 55,453,486 | 55,486,815 | CopyNumber | Variation_48052 (DGV) |
11 | 55,437,126 | 55,483,713 | CopyNumber | Variation_48054 (DGV) |
11 | 55,463,782 | 55,584,109 | CopyNumber | Variation_48056 (DGV) |
11 | 55,437,126 | 55,596,313 | CopyNumber | Variation_48840 (DGV) |
11 | 55,442,368 | 55,596,313 | CopyNumber | Variation_48841 (DGV) |
11 | 55,444,868 | 55,591,047 | CopyNumber | Variation_48842 (DGV) |
11 | 55,444,868 | 55,596,313 | CopyNumber | Variation_48843 (DGV) |
11 | 55,447,427 | 55,596,313 | CopyNumber | Variation_53429 (DGV) |
11 | 55,360,213 | 55,490,377 | CopyNumber | Variation_53507 (DGV) |
11 | 55,422,345 | 55,603,590 | CopyNumber | Variation_65956 (DGV) |
11 | 55,422,701 | 55,509,962 | CopyNumber | Variation_85778 (DGV) |
CopyNumber | 168 (Hasin) | |||
11 | 55,482,157 | 55,485,194 | Deletion | #286 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.