OR5F2P Olfactory Receptor
| Gene Symbol | OR5F2P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | F |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-164, OR11-157, HsOR11.11.40P, ORL3575 |
| External Ids | HGNC: 15286 GeneBank: AB065659, AB065843, AF546630-AF546643, BK004579, BK004766, NG_004193 ORDB: ORL3575 |
| Build #39 labels | OR5F2P |
| Chromosomal location | 11:56,015,017-56,015,957 (-) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5F1 | 91.08% | 314 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5F2 | 86% | 311 |
| Mouse | Or5w1 | 55% | 312 |
| Rat | Or8h10 | 55% | 309 |
| Cow | OR5F2B | 85% | 314 |
| Cow | OR5F2 | 85% | 314 |
| Cow | OR5F2C | 84% | 314 |
| Orang | OR5E1P | 55% | 311 |
| Horse | OR5F11P | 77% | 302 |
| Chimp | OR5F2 | 96% | 314 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | BC101240 |
Sequence information
| Nucleotide sequence |
ATGACCAGAAAAAATTATACCTCACTGACTGAGTTCATCCTATTGGGATTAGCAGACACG CTGGAGCTACAGATTATCCTCTTTCTGTTATTTCTTGTGATTTACACACTTACCGTACTG GGAAATATCGGGATGATCCTCTTAATCAGGATCGATTCCCGGCTTCACACACCCATGTAT TTCTTCCTGGTTAACCTGTCCTTTGTGGACATTTGTTACTCAACCACCATCACCCCAAAG ATGCTGGCAGATTTATTATCAGAGAAGAAAACCATCTCTTTTGCTGGCTGCTTCCTACAG ATGTACTTCTTTATCGCCCTGGCGACAACCGAATGCATCCTCTTTGGGTTAATGGCCTAT GACCGGTATGTGACCATATGTCGCCCGCTGCTTTACTCCTTGATCATGTCCAGGACAGTC TGCCTAAAAATGGCAGCCGGGGCTTTTGCTGCAGGGTTGCTGAACTCCATGGTCAACACT AGCTATGTCAGCAGCTTGTCATTCTGTGGCTCCAATGTCATCCATCACTTCTTCTGCAAC AGTCCCCCACTTTTTAAGCTTTCTTGTTCTGACACACACTTGAAGGAAAGCATATTTTCC ACTTTTGCTGGTGTGAATAAGGTCGGGGCTCTGCTTGTCATCCTCTCCTCCTATTCCTAC GTTCTCTTCTCCATTTTTTCTATGCATTCAGGGGAGGGGAGGCACAGAGCTTTCTCCACG TGTGCCTCTCACCTGACAGCCATAATCCTCTTCTACACCACCTCCATCTATACCTACCTG AGACCTAGTTCCAGCTACTCCCTGATCAGGACAAAGTGGTTTCTGTGTTCTACACAGTGG TGATCCCCATATTGAATCCTCTGATCTACAGCCTCAGGAATAAGGAAGTAAAGAAGGCTT TAGCGAATGTAATTAGCAGGAAAAGGATCCCTTCATTTCTG |
| Conceptual translation |
MTRKNYTSLTEFILLGLADTLELQIILFLLFLVIYTLTVLGNIGMILLIRIDSRLHTPMY FFLVNLSFVDICYSTTITPKMLADLLSEKKTISFAGCFLQMYFFIALATTECILFGLMAY DRYVTICRPLLYSLIMSRTVCLKMAAGAFAAGLLNSMVNTSYVSSLSFCGSNVIHHFFCN SPPLFKLSCSDTHLKESIFSTFAGVNKVGALLVILSSYSYVLFSIFSMHSGEGRHRAFST CASHLTAIILFYTTSIYTYLRPSSSYSL/QDKVVSVFYTVVIPILNPLIYSLRNKEVKK ALANVISRKRIPSFL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 55,783,208 | 55,783,207 | Ins(1) | -/C | rs34538445 (DbSNP) | |
| 11 | 55,782,773 | 55,782,773 | SNP | A/C | rs7952321 (DbSNP) | |
| 11 | 55,782,994 | 55,782,994 | SNP | A/C | rs35601374 (DbSNP) | |
| 11 | 55,782,946 | 55,782,946 | SNP | A/G | rs7929796 (DbSNP) | |
| 11 | 55,783,155 | 55,783,155 | SNP | A/G | rs34107711 (DbSNP) | |
| 11 | 55,782,660 | 55,782,660 | SNP | A/G | rs2512922 (DbSNP) | |
| 11 | 55,783,220 | 55,783,220 | SNP | A/T | rs61888539 (DbSNP) | |
| 11 | 55,783,058 | 55,783,058 | SNP | C/T | rs7933387 (DbSNP) | |
| 11 | 55,783,061 | 55,783,061 | SNP | C/T | rs7933389 (DbSNP) | |
| 11 | 55,782,896 | 55,782,896 | SNP | C/T | rs7933186 (DbSNP) | |
| 11 | 55,782,814 | 55,782,814 | SNP | G/T | rs1979464 (DbSNP) | |
| 11 | 55,782,600 | 55,782,600 | SNP | G/T | rs67563695 (DbSNP) | |
| 11 | 56,015,122 | 56,015,122 | SNP | T/A | 1000GP (CEU) | |
| 11 | 56,015,124 | 56,015,124 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 11 | 56,015,184 | 56,015,184 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 56,015,297 | 56,015,297 | SNP | C/A | 1000GP (CEU) | |
| 11 | 56,015,420 | 56,015,420 | SNP | T/C | 1000GP (CEU) | |
| 11 | 56,015,470 | 56,015,470 | SNP | A/G | 1000GP (CEU) | |
| 11 | 56,015,518 | 56,015,518 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 11 | 56,015,582 | 56,015,582 | SNP | T/C | 1000GP (CEU) | |
| 11 | 56,015,585 | 56,015,585 | SNP | T/C | 1000GP (CEU) | |
| 11 | 56,015,744 | 56,015,744 | SNP | A/T | 1000GP (CEU) | |
| 11 | 100 | -100 | SNP | T/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
| 11 | 55,710,709 | 55,787,839 | CopyNumber | Variation_1245 (DGV) |
| 11 | 55,689,863 | 55,849,156 | CopyNumber | Variation_2927 (DGV) |
| 11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
| 11 | 55,685,799 | 55,842,512 | CopyNumber | Variation_9189 (DGV) |
| 11 | 55,685,556 | 55,819,544 | CopyNumber | Variation_29912 (DGV), Variation_48846 (DGV) |
| 11 | 55,685,556 | 55,796,170 | CopyNumber | Variation_48845 (DGV) |
| 11 | 55,685,556 | 55,836,620 | CopyNumber | Variation_48847 (DGV) |
| 11 | 55,683,109 | 55,833,490 | CopyNumber | Variation_85786 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR5F2P.aApr07-unspliced | main_exon | CDS_partial | chr11 | 56,015,019 | 56,015,956 | - |