OR5G3P Olfactory Receptor
| Gene Symbol | OR5G3P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | G |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-213, HsOR11.11.94P |
| External Ids | HGNC: 15287 GeneBank: AB065498, BK004647, NG_002406 |
| Build #39 labels | OR5G3P, OR5G6P |
| Chromosomal location | 11:56,819,576-56,820,516 (-) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks | Segregating Pseudo Gene, a polymorphism of C->del at position 343 |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5G5P | 70.7% | 314 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5G3 | 81% | 313 |
| Mouse | Or5g29 | 78% | 314 |
| Rat | Or5g29 | 79% | 313 |
| Cow | OR5G34 | 78% | 314 |
| Orang | OR5G3 | 95% | 314 |
| Horse | OR5G37 | 79% | 314 |
| Horse | OR5G3B | 80% | 306 |
| Chimp | OR5G3 | 99% | 314 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB231739 |
Sequence information
| Nucleotide sequence |
ATGGAAGATAAGAACCAGACAGTAGTGACTGAATTTCTCTTATTGGGCCTCACAGATCAT CCCTATCAGAAGATTGTTCTCTTCTTCATGTTTCTCTTTGTTTATCTTATCACCCTGGGA GGTAACTTGGGGATGATCACTCTCATATGGATTGATCCCAGACTCCACACTCCTATGTAC TTTTTTCTTAGGCACTTGTCCTTTGTAGATATTTGTTCCTCTTCTTCTGTTGTGCCTAAG ATGCTGTGTAATATCTTTGCAGAGAAAAAAGACATCACTTTTCTGGGTTGTGCTGCACAG ATGTGGTTCTTTGGTCTCTTTGAGGCAGCTGAGTGTTTTCTCTGGCTGCCATGGCATATG ACCGGTATGTGGCCATCTGCAAGCCCTTGTTGTATACGCTCATTATGTCTCAGCAGGTCT GTATGCAGCTGGTGGTAGGGCCTTATGCCATGGCTCTTATAAGCACCATGACTCATACAA TTTTCACTTTTTGCTTACCCTTTTGTGGTTCAAATATTATCAATCACTTTTTCTGTGATA TTTTTCCACTGCTTTCCCTAGCATGTGCAGACACCTGGGTGAATAAATTTGTGCTGTTTG TCTTGGCTGGAGCTATAGGAGTACTCAGTGGTCTGATCATCATGGTCTCCTATATTTGCA TCCTGATGACCATCTTGAAGATCCAGACTGCTGATGGGAAGCAAAAAGCTTTCTTCACCT GTTTTTCTCACCTTGCGGCTGTCTCCATCCTGTATGGGACTCTTTTCTTGATTTATGTTC GGCCAAGTTCAAGTTCCTCCCTGGGTATCTATAAAGTGATTTCTCTATTTTATACTGTGG TAATCCCCATGGTTAACCCCCTTATTTACAGCTTGAGGAATAAGGAGGTGAAAGATGCAT TCAGAAGAAAAATTGAGAGGAAAAAATTTATTATAGGTAGG |
| Conceptual translation |
MEDKNQTVVTEFLLLGLTDHPYQKIVLFFMFLFVYLITLGGNLGMITLIWIDPRLHTPMY FFLRHLSFVDICSSSSVVPKMLCNIFAEKKDITFLGCAAQMWFFGLFEAAECF/LAAMA YDRYVAICKPLLYTLIMSQQVCMQLVVGPYAMALISTMTHTIFTFCLPFCGSNIINHFFC DIFPLLSLACADTWVNKFVLFVLAGAIGVLSGLIIMVSYICILMTILKIQTADGKQKAFF TCFSHLAAVSILYGTLFLIYVRPSSSSSLGIYKVISLFYTVVIPMVNPLIYSLRNKEVKD AFRRKIERKKFIIGR Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 56,587,505 | 56,587,505 | Del(1) | -/A | rs59922864 (DbSNP) | |
| 11 | 56,587,652 | 56,587,651 | Ins(1) | -/G | rs61392974 (DbSNP) | |
| 11 | 56,587,056 | 56,587,056 | SNP | A/C | rs61108658 (DbSNP) | |
| 11 | 56,587,975 | 56,587,975 | SNP | A/C | rs1788998 (DbSNP) | |
| 11 | 56,587,630 | 56,587,630 | SNP | A/G | rs11823625 (DbSNP) | |
| 11 | 56,587,421 | 56,587,421 | SNP | G/T | rs7125364 (DbSNP) | |
| 11 | 56,587,406 | 56,587,406 | SNP | G/T | rs41414647 (DbSNP) | |
| 11 | 56,819,580 | 56,819,580 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 11 | 56,819,930 | 56,819,930 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 11 | 56,819,945 | 56,819,945 | SNP | G/T | 1000GP (CEU) | |
| 11 | 56,820,154 | 56,820,154 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 56,820,499 | 56,820,499 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 11 | 100 | -100 | SNP | C/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 56,585,052 | 56,588,092 | Deletion | #225 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.