OR5G4P Olfactory Receptor
| Gene Symbol | OR5G4P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | G |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-219, OR11-212, HsOR11.11.92P, ORL3646 |
| External Ids | HGNC: 15288 GeneBank: BK004719, BK004754, NG_004192 ORDB: ORL3646 |
| Build #39 labels | OR5G4P |
| Chromosomal location | 11:56,790,121-56,791,101 (-) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5G1P | 69.46% | 298 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5G1B | 75% | 301 |
| Mouse | Or5g9 | 72% | 310 |
| Rat | Or5g9 | 73% | 310 |
| Cow | OR5G1BP | 72% | 301 |
| Orang | OR5G4BP | 88% | 297 |
| Horse | OR5G47 | 73% | 310 |
| Chimp | OR5G1 | 69% | 310 |
Sequence information
| Nucleotide sequence |
ATGATCAGTTCTCTATTTTTCTCACTATAGAGACTAAAATCAACCAATGGCTGATGGAAA TATAAAAGGATCACAGAATTCATTTTTGTAGGCTTAAGGTATCATCTTCAGCTGCAAGTC TTCCTTTTCTTACCATTTCTACCTTTTTTACCTCATTACTATGACAGAAAACTTGGGCAT GATGGTTCGCATCTGGCTCGATTCCTGCTTTCACACACCTATGTACTTTGTCCTCAGCTA CCTGTCCTTTGTGGACATCTGCTTCTCATCCGTTGTGGGCCACAAGTTGCTCACTGACTT ATTTGCTGTAAGGAAAGCCATCTCTTTCCTGGGCTGTCCCTTGCAGCAGTGGTTCTTTGG GTTCTTCATAGTCATTGAGTATCTTCTCTTGGCTTCCATGGCCTATGACAATTATGTGGC CATCTGTAACCCATTGTTGTACTCAGTGGCCATGTAATAGAGACTGTGCATCCAGCTGGT GGTTGTACGTTATGCAGCTGATTTCTTCAACACCATAACTCACACAACGGCTGCTTTTCA TTTTCCCTTTTTTCACTCCAACATTATCAATCATTTCTTCTGTGACATGTCTCTCCTTCT TTCTCTCGTGTGTGCTGACGCCCGGATCAATAAATTGTTAGTTTTCATTGTGGCTGGAGC TGTACTAGTTGTCAGTAGCCTGACCATTATAATCTCCTATTTTTACATCCTTACTGACAT TCTGAGGATCTGCTCTGCTAATGGGAAGAACAAAACTTTTTCCACCTGCTCTTCACACTT AACAGCTGTTTCCATCTTTTATGGGTCTCTCTTCTTTAGCTACGTTCGACCAGGTGCAAC TTTTTACCCGGAACTCAATAAAATAGTGTTGGTGTTCTGTACATCCCCATGTTGAAACCT CTCATCTACAGCTTGATAAATAAAGAAGTATCCTAGCCACTAGACCACCAGGGAAGTGGG GAAAGGATTCCCTATTTAATA |
| Conceptual translation |
MISSLFFSLXLK\PMADG/YKRITEFIFVGLRYHLQLQVFLFLPFLPF\LITMTEN LGMMVRIWLDSCFHTPMYFVLSYLSFVDICFSSVVGHKLLTDLFAVRKAISFLGCPLQQW FFGFFIVIEYLLLASMAYDNYVAICNPLLYSVAMXRLCIQLVVVRYAADFFNTITHTTA AFHFPFFHSNIINHFFCDMSLLLSLVCADARINKLLVFIVAGAVLVVSSLTIIISYFYIL TDILRICSANGKNKTFSTCSSHLTAVSIFYGSLFFSYVRPGATFYPELNKIVLVFC/IP MLKPLIYSLINKEVSXLDHQGSGERIPYLI Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 56,558,416 | 56,558,416 | SNP | A/G | rs17552099 (DbSNP) | |
| 11 | 56,558,306 | 56,558,306 | SNP | C/A | rs61995682 (DbSNP) | |
| 11 | 56,558,379 | 56,558,379 | SNP | G/A | rs475409 (DbSNP) | |
| 11 | 56,558,210 | 56,558,210 | SNP | T/C | rs479697 (DbSNP) | |
| 11 | 56,790,396 | 56,790,396 | SNP | G/A | 1000GP (CEU) | |
| 11 | 56,790,734 | 56,790,734 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 56,790,903 | 56,790,903 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 56,790,940 | 56,790,940 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 56,555,597 | 56,558,677 | Deletion | #224 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.