OR5H1 Olfactory Receptor
| Gene Symbol | OR5H11 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | H |
| Pseudogene | No |
| CORP pseudogene probability score | 0.03 (functional) |
| Aliases | HSHTPCRX14, HsOR3.3.4, ORL47 |
| External Ids | HGNC: 8346 GeneBank: HSHTPRX14, NM_001005338 ORDB: ORL47 |
| Build #39 labels | OR5H1 |
| Chromosomal location | 3:98,132,698-98,133,636 (+) |
| Cluster | 3@98 |
| Synteny | CLIC#9 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5H15 | 94.57% | 313 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5H13 | 78% | 308 |
| Mouse | Or5h26 | 77% | 308 |
| Rat | Or5h17 | 76% | 309 |
| Cow | OR5H13 | 78% | 308 |
| Orang | OR5H8 | 86% | 309 |
| Orang | OR5H6 | 83% | 309 |
| Orang | OR5H8BP | 84% | 257 |
| Horse | OR5H40 | 79% | 309 |
| Chimp | OR5H15 | 92% | 313 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB528772 |
Sequence information
| Nucleotide sequence |
ATGGAAGAGGAAAATGCAACATTGCTGACAGAGTTTGTTCTCACAGGATTTTTATATCAA CCACAGTGGAAAATACCCCTGTTCCTGGCATTCTTGGTAATATATCTCATCACCATCATG GGGAATCTTGGTCTGATTGCTGTCATCTGGAAAGACCCTCACCTTCATATCCCAATGTAC TTACTCCTTGGGAATTTAGCTTTTGTGGATGCTTGGATATCATCCACAGTGACCCCAAAG ATGCTGAATAACTTCTTAGCTAAGAGTAAGATGATATCTCTCTCTGAATGCAAGATACAG TTTTTTTCGTTTGCAATCAGTGTAACCACGGAATGTTTTCTCTTGGCAACGATGGCATAT GATCGCTATGTAGCCATATGCAAACCTTTACTTTATCCAGCCATTATGACCAATGGACTG TGCATCCGGCTATTAATCTTGTCATATGTAGGTGGTATTCTTCATGCTTTAATCCATGAA GGATTTTTATTCAGACTAACCTTCTGTAACTCCAACATAGTACATCACATTTACTGTGAC ACTATCCCATTGTCTAAGATTTCTTGTACTGATTCTTCTATTAATTTTCTAATGGTTTTT ATTTTCTCAGGTTCAATTCAGGTATTCAGCATTGTGACTATTCTTGTATCTTATACATTT GTTCTCTTCGCAATCTTAAAAAAGAAATCTGATAAAGGTGTAAGGAAAGCCTTTTCCACC TGTGGAGCCCATCTCTTCTCTGTCTCTTTATACTATGGACCCCTTCTCTTCATTTATGTG GGCCCTGCATCTCCGCAAGCAGATGATCAAGATATGGTGGAGCCTCTATTCTACACTGTC ATCATTCCTTTGTTAAATCCTATCATCTACAGTCTGAGAAATAAGCAAGTCACAGTTTCA TTCACAAAAATGTTAAAAAAACATGTTAAGGTTTCATAC |
| Conceptual translation |
MEEENATLLTEFVLTGFLYQPQWKIPLFLAFLVIYLITIMGNLGLIAVIWKDPHLHIPMY LLLGNLAFVDAWISSTVTPKMLNNFLAKSKMISLSECKIQFFSFAISVTTECFLLATMAY DRYVAICKPLLYPAIMTNGLCIRLLILSYVGGILHALIHEGFLFRLTFCNSNIVHHIYCD TIPLSKISCTDSSINFLMVFIFSGSIQVFSIVTILVSYTFVLFAILKKKSDKGVRKAFST CGAHLFSVSLYYGPLLFIYVGPASPQADDQDMVEPLFYTVIIPLLNPIIYSLRNKQVTVS FTKMLKKHVKVSY Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 3 | 97,851,998 | 97,851,998 | NS | A/C | I/L | rs9845327 (DbSNP) |
| 3 | 97,851,989 | 97,851,989 | NS | A/G | I/V | rs5009895 (DbSNP) |
| 3 | 97,852,211 | 97,852,211 | NS | A/G | T/A | rs72926074 (DbSNP) |
| 3 | 97,852,058 | 97,852,058 | NS | A/G | I/V | rs62269700 (DbSNP) |
| 3 | 97,852,229 | 97,852,229 | NS | A/T | T/S | rs9849637 (DbSNP) |
| 3 | 97,851,983 | 97,851,983 | NS | A/T | T/S | rs5009896 (DbSNP) |
| 3 | 97,852,040 | 97,852,040 | NS | A/T | T/S | rs5009893 (DbSNP) |
| 3 | 97,851,993 | 97,851,993 | NS | C/G | A/G | rs5009894 (DbSNP) |
| 3 | 97,851,995 | 97,851,995 | NS | C/G | R/G | rs62269699 (DbSNP) |
| 3 | 97,852,083 | 97,852,083 | NS | C/T | T/I | rs9826076 (DbSNP) |
| 3 | 97,852,335 | 97,852,335 | NS | C/T | P/L | rs73133252 (DbSNP) |
| 3 | 97,851,892 | 97,851,892 | SYN | A/G | T/T | rs5009897 (DbSNP) |
| 3 | 97,852,195 | 97,852,195 | SYN | C/T | Y/Y | rs72933949 (DbSNP) |
| 3 | 97,852,066 | 97,852,066 | SYN | C/T | H/H | rs62269701 (DbSNP) |
| 3 | 98,133,447 | 98,133,447 | SYN | A/G | L/L | 1000GP (CEU) |
| 3 | 98,133,385 | 98,133,385 | NS | T/A | S/T | 1000GP (CEU, CHBJPT) |
| 3 | 100 | -100 | NS | G/A | A/T | 1000GP (YRI, YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| A119T | R143Q | A224T | S230T | % Freq | CORP | |
|---|---|---|---|---|---|---|
| 1 | A | R | A | S | 75.88 | 0.084 |
| 2 | A | R | A | T | 21.04 | 0.084 |
| 3 | T | R | T | S | 2.07 | 0.123 |
| 4 | A | Q | A | T | 0.77 | 0.084 |
| 5 | A | Q | A | S | 0.15 | 0.084 |
| 6 | A | R | T | T | 0.08 | 0.084 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR5H1.aApr07-unspliced | main_exon | CDS | chr3 | 98,132,698 | 98,133,636 | + |
| 3UTR | chr3 | 98,133,636 | 98,133,639 | + | ||