OR5H3P Olfactory Receptor
| Gene Symbol | OR5H3P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | H |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR3-4, HsOR3.3.8P, ORL3107 |
| External Ids | HGNC: 14753 GeneBank: BK004591, NG_002237 ORDB: ORL3107 |
| Build #39 labels | OR5H3P |
| Chromosomal location | 3:98,207,423-98,208,338 (+) |
| Cluster | 3@98 |
| Synteny | CLIC#9 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5H1 | 87.66% | 308 |
| OR5H14 | 89.03% | 310 |
| OR5H15 | 86.04% | 308 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5H13 | 76% | 308 |
| Mouse | Or5h26 | 73% | 309 |
| Rat | Or5h26 | 73% | 309 |
| Cow | OR5H13 | 77% | 308 |
| Orang | OR5H6 | 85% | 308 |
| Orang | OR5H8 | 83% | 308 |
| Orang | OR5H8BP | 83% | 256 |
| Horse | OR5H40 | 76% | 308 |
| Chimp | OR5H14BP | 88% | 310 |
| Chimp | OR5H14 | 87% | 310 |
| Chimp | OR5H1 | 88% | 308 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | AI656798 |
Sequence information
| Nucleotide sequence |
ATGGAAGAGGAAAATGCAACATTGCTGACAGAGTTTGTTCTCACAGGACTTTTATATCAA CCACAGTGGAAAATACCCCTGTTCCTGACATTCTTGGTAATATATCTCATCACCATCATG GGGAATCTTGGTCTGATTGCTGTCATCTGGAAAGACCCTCACCTTCAGATCCCAATGTAC TTACTCCTCGGGAATTTAGCTTTTGTAGATGCTTGGATATCATCTACAGTGACTCCAAAG ATGCTGAATAACTTCTTAGCTAAGAGTAAGATGGTATCTCTGCCTGAAAGCAAAATACAG TTTTTTTCGTTTGCAATCAGTGTAACCACTGAATGTTTTCTCTTGGCAACAATGGCATAT GATCGCTATGTAGCCATATGCAAACCTTTACTTTATCCAGCCATTATGACCAATGGACTG TGCATCCGGCTATGTAGGTGGTCTTCTTCATGCTTTAATCCATGAAGGATTTTTATTCAG ACTAACCTTCTGTAACTCCAACGTAGTACACCACATTTACTGTGACATTATCCCATTGTC TAAGATTTCTTGTACTGATTCTTCTATTAATTTTCTAATGGTTTTTATTTTCTCAGGTTC AATTCAAGTTTTCACCATTGGGACTGGTCTTATATCTTATACATTTGTCCTCTTTACAAT CTTGAAAAAGAAATCTGTCAAAGGTATAAGAAAAGCCTTCTCCACCTGTGGAGCTCATCT CTTATCTGTATCTTTATACCATGGGCCCCTCGACTTCATGTATATGGGCTCTGCATCCCC ACAGGCTGATGACGAAGACATGATGGAGTCTCTATTTTACACTGTCATAGTTCCTTTATT AAATCCCATGACCTACAGCCTGAGAAACAAACAAGTAATAGCTTCATTCACAAAAATGTT CAAAAGAAATAATATT |
| Conceptual translation |
MEEENATLLTEFVLTGLLYQPQWKIPLFLTFLVIYLITIMGNLGLIAVIWKDPHLQIPMY LLLGNLAFVDAWISSTVTPKMLNNFLAKSKMVSLPESKIQFFSFAISVTTECFLLATMAY DRYVAICKPLLYPAIMTNGLCIRL\GGLLHALIHEGFLFRLTFCNSNVVHHIYCDIIPL SKISCTDSSINFLMVFIFSGSIQVFTIGTGLISYTFVLFTILKKKSVKGIRKAFSTCGAH LLSVSLYHGPLDFMYMGSASPQADDEDMMESLFYTVIVPLLNPMTYSLRNKQVIASFTKM FKRNNI Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 3 | 97,926,698 | 97,926,697 | Ins(14) | -/TATTAATCTTGTCA | rs66499506 (DbSNP) | |
| 3 | 97,926,701 | 97,926,700 | rescued_Ins(14) | -/TAATCTTGTCATAT | rs72081882 (DbSNP) | |
| 3 | 97,926,354 | 97,926,354 | SNP | A/G | rs9837299 (DbSNP) | |
| 3 | 97,926,625 | 97,926,625 | SNP | A/G | rs9837684 (DbSNP) | |
| 3 | 97,926,733 | 97,926,733 | SNP | C/G | rs9855110 (DbSNP) | |
| 3 | 97,926,693 | 97,926,693 | SNP | C/T | rs9818544 (DbSNP) | |
| 3 | 98,207,510 | 98,207,510 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 3 | 98,208,216 | 98,208,216 | SNP | G/A | 1000GP (CEU) | |
| 3 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 3 | 97,874,279 | 97,931,369 | CopyNumber | Variation_62080 (DGV) |
| 3 | 97,899,419 | 97,939,393 | CopyNumber | Variation_68423 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.