OR5H4P Olfactory Receptor
| Gene Symbol | OR5H4P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | H |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR3-5, HsOR3.3.9P, ORL3098 |
| External Ids | HGNC: 14763 GeneBank: BK004592, NG_002231 ORDB: ORL3098 |
| Build #39 labels | OR5H4P |
| Chromosomal location | 3:98,222,044-98,222,993 (+) |
| Cluster | 3@98 |
| Synteny | CLIC#9 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5H1 | 72.7% | 315 |
| OR5H6 | 75.88% | 311 |
| OR5H7P | 76.53% | 311 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5H13 | 68% | 310 |
| Mouse | Or5h26 | 68% | 312 |
| Rat | Or5h26 | 68% | 312 |
| Cow | OR5H36 | 70% | 314 |
| Orang | OR5H8 | 75% | 311 |
| Horse | OR5H40 | 69% | 311 |
| Chimp | OR5H7 | 77% | 311 |
Sequence information
| Nucleotide sequence |
ATGGAAGAGGAAAATGCAACATTACTGACAGAATTTGTTCTCACAGGATTTTTATGTCAA CAAGGATTTTTATGGGAAATACCCCTGTTCCTGGCATTCTTGGTAATAGATCTCATCACC ATCATGGGGAATCTTGGTCTGATTTTTCTCATCTGGAAAGACCCTCACCTTCATATTTCA ATGTACTTATTCCTTGGGAGTTTAGCTTTTGTGGATACTTGGTTATCATCCACAGTGACT CCGAAGATGCTGATCAACTTCTTAGCTAAGAGTAAGATGATATCTCTCTCTGAATGCATG GTACAATTTTTTTTCCCTTGCAATCAGTGTAACCACAGAATGTTTTATCTCGGCATCAAT GGCATATGATCGCTATGCAGACATATGCAAACCTTTACTTTATCCAGTCATTATGACCAA TGAACTATGCATCTGGCTATTTGTCTTGTCATTTCTAGGTGGCCTTTTTCATGCTTTAAT CCATGAAGGTTTTTTATTCAGACTAACCTTCTGTAACTCCAACATGATACAACATTTTTA CTGTGACATTATCCCATTGTTAAAGATTTCATGTACTGATTCTTGTATTAATTTTCTAAT GTTTTTTATTTTCTCAGGTTCAATTCAAGTTTTAACCATTGGGATTGTTTTTGTATCTTA TATGTTTGTTCTCTTTACAATCTTAAAAAAGAAGTCTAACAAAGGCATAAGGGAAGCCTT TTCCACCTGTGGAGCCCATTACATACCTCTCTCTTTATGTTATGGCCTCCTTCTCTTCAT GTATGTGGGCCCTGCAGCTCCACAAGCAGATAATCAAGATATGATGGAGTATCTATTTTA CCCTATCATTGTGCGTTTGTTAAACCATATTACTACAGCCTGAGAAATAAGCAATAATAG GTTCACTCACAAAAATGTTAAAATAAAATATTTGCATTGCATACTTATCT |
| Conceptual translation |
MEEENATLLTEFVLTGFLCQQGFLWEIPLFLAFLVIDLITIMGNLGLIFLIWKDPHLHIS MYLFLGSLAFVDTWLSSTVTPKMLINFLAKSKMISLSECMVQFFFPCNQCN\ECFISAS MAYDRYADICKPLLYPVIMTNELCIWLFVLSFLGGLFHALIHEGFLFRLTFCNSNMIQHF YCDIIPLLKISCTDSCINFLMFFIFSGSIQVLTIGIVFVSYMFVLFTILKKKSNKGIREA FSTCGAHYIPLSLCYGLLLFMYVGPAAPQADNQDMMEYLFYPIIV/FVKPYYYSLRNKQ X/SLTKMLKXICIAYLS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 3 | 97,941,013 | 97,941,012 | Ins(1) | -/G | rs34863164 (DbSNP) | |
| 3 | 97,941,822 | 97,941,822 | SNP | A/C | rs28755796 (DbSNP) | |
| 3 | 97,941,630 | 97,941,630 | SNP | A/G | rs57715149 (DbSNP) | |
| 3 | 97,940,932 | 97,940,932 | SNP | A/G | rs35658290 (DbSNP) | |
| 3 | 97,941,104 | 97,941,104 | SNP | A/G | rs13063850 (DbSNP) | |
| 3 | 97,941,152 | 97,941,152 | SNP | A/G | rs4619821 (DbSNP) | |
| 3 | 97,941,742 | 97,941,742 | SNP | C/G | rs16839446 (DbSNP) | |
| 3 | 97,941,540 | 97,941,540 | SNP | C/G | rs72931007 (DbSNP) | |
| 3 | 97,941,080 | 97,941,080 | SNP | C/T | rs1846078 (DbSNP) | |
| 3 | 97,941,712 | 97,941,712 | SNP | C/T | rs28435778 (DbSNP) | |
| 3 | 97,941,655 | 97,941,655 | SNP | C/T | rs55642832 (DbSNP) | |
| 3 | 97,941,616 | 97,941,616 | SNP | G/T | rs55844177 (DbSNP) | |
| 3 | 98,222,088 | 98,222,088 | SNP | A/G | 1000GP (CEU) | |
| 3 | 98,222,236 | 98,222,236 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 3 | 98,222,260 | 98,222,260 | SNP | A/G | 1000GP (CEU) | |
| 3 | 98,222,696 | 98,222,696 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 3 | 98,222,772 | 98,222,772 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 3 | 98,222,786 | 98,222,786 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 3 | 98,222,811 | 98,222,811 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 3 | 98,222,868 | 98,222,868 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 3 | 98,222,898 | 98,222,898 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 3 | 98,222,978 | 98,222,978 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 3 | 98,222,517 | 98,222,517 | SNP | C/G | 1000GP (CHBJPT) | |
| 3 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.