OR5H7P Olfactory Receptor
| Gene Symbol | OR5H7P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | H |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR3-6, HsOR3.3.10P, ORL3100 |
| External Ids | HGNC: 14771 GeneBank: AB065459, BK004589, NG_002228 ORDB: ORL3100 |
| Build #39 labels | OR5H7P |
| Chromosomal location | 3:98,238,352-98,239,278 (+) |
| Cluster | 3@98 |
| Synteny | CLIC#9 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5H14 | 87.34% | 308 |
| OR5H6 | 89.64% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5H13 | 75% | 308 |
| Mouse | Or5h26 | 77% | 308 |
| Rat | Or5h26 | 75% | 308 |
| Cow | OR5H37P | 75% | 309 |
| Orang | OR5H6 | 85% | 309 |
| Horse | OR5H8 | 76% | 309 |
| Chimp | OR5H7 | 96% | 309 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | DV080100 |
Sequence information
| Nucleotide sequence |
ATGGAGGAGGAAAATACAACATTGCTGACAGAGTTTGTTCTCACAGGATTTTTATATCAA CCACAGTGGAAAATACCCCTGTTCCTGGCATTCTTGGTAATATAGCTCATCACCATCATG GGGAATCTTGGTCTAATTGTTCTCATCTGGAAAGACCCTCACCTTCATATCCCAATGTAT TTATTCCGTGGGAGTTTGGCCTTTGTGGATGCTTGGTTATCATCCACAGTGACTCCAAAG ATGCTGATCAACTTCTTAGCTAAGAGTAAGATGATATCTCTCTCTGAATGCATGGTACAA TTTTTTTCCTTTGTAATCAGTGTAACCACAGAATGTTTTATCTCGGCATCAATGGCATAT GATCGCTATGTAGCCATTTGCAAAGCTTTACTTTATCCAGTCATTATGACCAACGGACTA TGCATCCAGCTATTAGTCTTGTCATTTATAGGTGGCCTTCTTCATGCTTTAATCCATGAA ATTTTTTTATTCAGATTAACCTTCTGTAATTCCAACATAATACAACACTTTTACTGTGAC ATTATCCCATTGTTAAAGATTTCCTGTACTGATTCTTTTATTAACTTTCTAATGGTTTTT ATTTTCGCAGATTCAATTCAAGTTTTTACCATTGGAACTATTCTTATATCTTATACACTT GTCCTCCTTATAATCTTAAAAAATAAGTCTGTCAAAGGGATACAAAAAGCTGTCTCCACC TGTGGAGCTCATCTCTTATCTGTATCTTTATACTATGGGCCCCTTGTCTTCATGTATGTG GGCTCTGCATCCCCGCAAGCAGATGACCAAGATATGATGGAGTCTCTATTTTACACTGTC ATCGTTCCTTTATTAAATTCCATGATCTACAGCCTGAGAAACAAGCAAGTAATAGCTTCA TTCACAAAAATGTTCAAAAGAAATGTT |
| Conceptual translation |
MEEENTTLLTEFVLTGFLYQPQWKIPLFLAFLVIXITIMGNLGLIVLIWKDPHLHIPMY LFRGSLAFVDAWLSSTVTPKMLINFLAKSKMISLSECMVQFFSFVISVTTECFISASMAY DRYVAICKALLYPVIMTNGLCIQLLVLSFIGGLLHALIHEIFLFRLTFCNSNIIQHFYCD IIPLLKISCTDSFINFLMVFIFADSIQVFTIGTILISYTLVLLIILKNKSVKGIQKAVST CGAHLLSVSLYYGPLVFMYVGSASPQADDQDMMESLFYTVIVPLLNSMIYSLRNKQVIAS FTKMFKRNV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 3 | 97,957,609 | 97,957,611 | mnp | CGG/TGA | rs71626325 (DbSNP) | |
| 3 | 97,957,718 | 97,957,718 | SNP | A/C | rs72932879 (DbSNP) | |
| 3 | 97,957,349 | 97,957,349 | SNP | A/G | rs6439722 (DbSNP) | |
| 3 | 97,957,490 | 97,957,490 | SNP | A/G | rs6439724 (DbSNP) | |
| 3 | 97,957,611 | 97,957,611 | SNP | A/G | rs34752089 (DbSNP) | |
| 3 | 97,957,961 | 97,957,961 | SNP | A/G | rs72932882 (DbSNP) | |
| 3 | 97,957,580 | 97,957,580 | SNP | C/G | rs7640735 (DbSNP) | |
| 3 | 97,958,054 | 97,958,054 | SNP | C/T | rs9851509 (DbSNP) | |
| 3 | 97,957,609 | 97,957,609 | SNP | C/T | rs7619376 (DbSNP) | |
| 3 | 97,957,473 | 97,957,473 | SNP | C/T | rs7619253 (DbSNP) | |
| 3 | 97,957,539 | 97,957,539 | SNP | C/T | rs6439725 (DbSNP) | |
| 3 | 97,957,730 | 97,957,730 | SNP | C/T | rs72932881 (DbSNP) | |
| 3 | 97,958,115 | 97,958,115 | SNP | G/T | rs73854556 (DbSNP) | |
| 3 | 98,238,765 | 98,238,765 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 3 | 98,238,767 | 98,238,767 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 3 | 98,239,210 | 98,239,210 | SNP | T/C | 1000GP (CHBJPT) | |
| 3 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.