OR5J2 Olfactory Receptor
| Gene Symbol | OR5J21 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | J |
| Pseudogene | No |
| CORP pseudogene probability score | 0.85 (pseudogene) |
| Aliases | OR11-266, HsOR11.11.51 |
| External Ids | HGNC: 19612 GeneBank: AB065595, BK004517, HSHTPRHO2, NM_001005492 |
| Build #39 labels | OR5J2 |
| Chromosomal location | 11:56,176,618-56,177,553 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5J1P | 69.55% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5J2B | 83% | 312 |
| Mouse | Or5j3 | 78% | 312 |
| Rat | Or5j1 | 68% | 309 |
| Cow | OR5J15P | 76% | 310 |
| Orang | OR5E1P | 55% | 310 |
| Horse | OR5J1 | 70% | 312 |
| Chimp | OR5J1 | 70% | 312 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB528818 |
| GNF Atlas2 | gnf1h10906_at |
Sequence information
| Nucleotide sequence |
ATGGCTGATGATAATTTTACAGTTGTCACTGAGTTTATTCTTTTGGGATTGACAGATCAT GCTGAACTAAAAGCTGTGCTTTTTGTGGTGTTCCTGGTGATTTACGCCATTACCTTGTTG AGGAATCTGGGCATGATCCTCTTAATCCAAATCACCTCCAAACTCCACACACCCATGTAC TTTTTACTCAGCTGTCTTTCATTTGTGGATGCCTGCTATTCATCTGCAATTGCACCCAAA ATGCTGGTGAACCTCCTGGTTGTGAAGGCAACAATTTCTTTCTCTGCTTGCATGGTACAG CATTTGTGTTTCGGAGTGTTCATCACCACAGAAGGCTTCTTACTGTCAGTGATGGCCTAT GACCGCTATGTGGCCATTGTGAGTCCCTTGCTTTACACTGTAGCCATGTCTGATAGAAAG TGTGTGGAGCTTGTCACAGGATCATGGATAGGTGGAATAGTTAACACATTAATCCACACA ATCAGCTTGAGGAGACTGTCCTTTTGTAGGCTAAATGCTGTCAGCCACTTCTTCTGTGAC ATTCCTTCACTGCTAAAGCTGTCATGTTCTGACACCTCCATGAATGAGTTGTTGCTGTTA ACCTTCTCCGGAGTCATTGCCATGGCCACCTTCTTGACTGTGATCATTTCCTACATCTTC ATTGCTTTTGCTAGCCTAAGGATCCACTCAGCATCAGGCAGACAGCAAGCCTTCTCCACC TGTGCCTCTCACCTGACTGCTGTGACCATATTCTATGGTACCTTAATCTTTAGCTACATT CAGCCAAGCTCCCAGTATTTTGTGGAACAAGAGAAAGTGGTTTCTATGTTCTATACGCTA GGGATTCCCATGTTAAACCTGTTGATACACAGTTTGAGAAACAAGGACGTAAAGGAGGCA GTGAAAAGGGCCATAGAAATGAAACATTTCCTCTGT |
| Conceptual translation |
MADDNFTVVTEFILLGLTDHAELKAVLFVVFLVIYAITLLRNLGMILLIQITSKLHTPMY FLLSCLSFVDACYSSAIAPKMLVNLLVVKATISFSACMVQHLCFGVFITTEGFLLSVMAY DRYVAIVSPLLYTVAMSDRKCVELVTGSWIGGIVNTLIHTISLRRLSFCRLNAVSHFFCD IPSLLKLSCSDTSMNELLLLTFSGVIAMATFLTVIISYIFIAFASLRIHSASGRQQAFST CASHLTAVTIFYGTLIFSYIQPSSQYFVEQEKVVSMFYTLGIPMLNLLIHSLRNKDVKEA VKRAIEMKHFLC Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | NS | G/C | M/I | 1000GP (YRI) |
| 11 | 100 | -100 | SYN | C/T | Y/Y | 1000GP (YRI, YRI) |
| 11 | 55,944,251 | 55,944,250 | Ins(1) | -/C | rs35524228 (DbSNP) | |
| 11 | 55,944,331 | 55,944,331 | Del(1) | -/A | rs35777813 (DbSNP) | |
| 11 | 55,944,474 | 55,944,474 | SYN | A/G | V/V | rs4489763 (DbSNP) |
| 11 | 55,944,501 | 55,944,501 | NS | C/G | I/M | rs12279899 (DbSNP) |
| 11 | 56,176,998 | 56,176,998 | SYN | G/A | V/V | 1000GP (CEU, CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 55,943,994 | 55,947,029 | Deletion | #220 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| G16E | M136I | R139G | % Freq | CORP | |
|---|---|---|---|---|---|
| 1 | G | M | R | 96.39 | 0.910 |
| 2 | G | I | R | 2.63 | 0.934 |
| 3 | G | I | G | 0.66 | 0.934 |
| 4 | E | M | R | 0.33 | 0.910 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR5J2.aApr07-unspliced | main_exon | CDS | chr11 | 56,176,618 | 56,177,553 | + |
| 3UTR | chr11 | 56,177,553 | 56,177,556 | + | ||