OR5M13P Olfactory Receptor
| Gene Symbol | OR5M13P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | M |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-200, HsOR11.11.78P, ORL3561 |
| External Ids | HGNC: 15293 GeneBank: AF179769, AF399361, AY284101-AY284132, BK004597, NG_002281 ORDB: ORL3561 |
| Build #39 labels | OR5M13P |
| Chromosomal location | 11:56,597,426-56,598,362 (-) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5M10 | 65.38% | 312 |
| OR5M11 | 64.38% | 306 |
| OR5M5P | 64.1% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5M13 | 86% | 309 |
| Dog | OR5M13C | 85% | 309 |
| Mouse | Or5m13 | 88% | 312 |
| Rat | Or5m13 | 87% | 312 |
| Rat | Or5m13b | 84% | 307 |
| Cow | OR5M13D | 80% | 310 |
| Orang | OR5E1P | 56% | 309 |
| Horse | OR5M13 | 87% | 312 |
| Horse | OR5M13F | 86% | 312 |
| Horse | OR5M13E | 84% | 312 |
| Chimp | OR5M13 | 96% | 312 |
| Chimp | OR5M13DP | 96% | 217 |
Sequence information
| Nucleotide sequence |
ATGTTAAAGAAAAACCATACAGCCGTGACTGAGTTTGTTCTCCTGGGACTGACAGATCGG GCTGAGCTGCAGTCCCTTCTTTTTGTGGTATTTCTAGTCATCTACCTTATCACAGTAATC GGCAATGTGAGCATGATCTTGTTAATCAGAAGTGACTCGACACTACACACTCCAATGTAC TTCTTCCTCAGTCACCTCTCCTTTGTAGATCTCTGTTATACCACCAATGTTACTCCTCAG ATGCTGGTTAACTTTTTATCCAAGAGAAAAACCATTTCCTTCATCGGCTGCTTTATCCAA TTTCACTTTTTCATTGCACTGGTGATTACAGATTATTATATGCTCACAGTGATGGCTTAT GACCGCTACATGGCCATCTGCAAGCCCTTGTTATATGGAAGCAAAATGACCAGGTGTGTC TGCCTCTGTCTCGCTGCTGCTCCCTATATTTATGGCTTTGCAAATGGTCTAAGCACAGAC CACCCTGATGCTTCGTCTGTCCTTCTGTGGACCCAATGACATCAACCACTTTTACTGTGC GGACCCACCCCTCTTAGTCCTCGCCTGCTCAGATACTTATGTCAAAGAGACCGCCATGTT GGTGGTGGCTGGTTCCAACCTCATTTGCTCTCTCACCGTCATCCTCATTTCCTACACTTT CATCTTCACTGCCATTCTGCGTATCCACACTGCTGAGGGGAGGCGCAAGGCCTTCTCCAC CTGCGGGTCTCATGTGACCGCTGTCACTGTCTTCTATGGGACACTGTTCTGCATGTACCT GAGGCCCCCTTCTGAGACATCTATACAACAGGGGAAAATTGTAGCTGTTTTTTATATCTT TGTGAGTCCGATGTTAAACCCATTGATCTACAGCCTGAGGAATAAAGACGTTAAAAGAAG TATAAGGAAAGTTATTCAAAAGAAACTGTTTGCTAAG |
| Conceptual translation |
MLKKNHTAVTEFVLLGLTDRAELQSLLFVVFLVIYLITVIGNVSMILLIRSDSTLHTPMY FFLSHLSFVDLCYTTNVTPQMLVNFLSKRKTISFIGCFIQFHFFIALVITDYYMLTVMAY DRYMAICKPLLYGSKMTRCVCLCLAAAPYIYGFANG\AQTTLMLRLSFCGPNDINHFYC ADPPLLVLACSDTYVKETAMLVVAGSNLICSLTVILISYTFIFTAILRIHTAEGRRKAFS TCGSHVTAVTVFYGTLFCMYLRPPSETSIQQGKIVAVFYIFVSPMLNPLIYSLRNKDVKR SIRKVIQKKLFAK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 56,365,247 | 56,365,247 | SNP | C/G | rs12270384 (DbSNP) | |
| 11 | 56,365,407 | 56,365,407 | SNP | C/G | rs11228672 (DbSNP) | |
| 11 | 56,365,038 | 56,365,038 | SNP | G/T | rs61903260 (DbSNP) | |
| 11 | 56,597,562 | 56,597,562 | SNP | G/T | 1000GP (CEU) | |
| 11 | 56,597,931 | 56,597,931 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 11 | 56,597,903 | 56,597,903 | SNP | C/A | 1000GP (CHBJPT) | |
| 11 | 56,598,078 | 56,598,078 | SNP | G/A | 1000GP (CHBJPT) | |
| 11 | 56,598,308 | 56,598,308 | SNP | C/A | 1000GP (CHBJPT) | |
| 11 | 56,598,344 | 56,598,344 | SNP | T/G | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | G/C | 1000GP (YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 138 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.