OR5M2P Olfactory Receptor
| Gene Symbol | OR5M2P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | M |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-193, OR11-195, HsOR11.11.71P, ORL3503 |
| External Ids | HGNC: 14803 GeneBank: AB065745, BK004642, BK004818, NG_004154 ORDB: ORL3503 |
| Build #39 labels | OR5M2P |
| Chromosomal location | 11:56,479,491-56,480,426 (-) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5M5P | 66.03% | 312 |
| OR5M7P | 67.53% | 308 |
| OR5M8 | 69.31% | 303 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5M5 | 70% | 312 |
| Mouse | Or5m5 | 69% | 312 |
| Rat | Or5m5 | 68% | 312 |
| Cow | OR5M5 | 67% | 312 |
| Orang | OR5E1P | 54% | 310 |
| Horse | OR5M56P | 75% | 298 |
| Chimp | OR5M6 | 68% | 308 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529253 |
Sequence information
| Nucleotide sequence |
ATGTCCAGAAGAAACTATACTGAACTGACAGAATTTGTTCTCTTGGGTCTAACAAGCCGT CCAGAGCTGCGAGTTGCTTTCTTGGCACTGTTCCTTTTTGTCTACATAGCCACTGTGGTA GGAAACTTGGGGATGATTATTTTAATCAAAGTTGATTCTCGACTTCACACTCCCATGTAA TTTTTTCTCTCCAGTTTGTCCATTCTAGATCTGTGTTTCTCCACAAATTTCACTCCCAAA ATGCTAGAAAATTTCTTATCAGAGAAGAAGACCATTTCCTATGCAGGTTGTTTGATGCAG TGCTATGTTGTCATTGCTGTGGTCCTTGCAGAGCACTGCATGTTGGCAGTCATGGCATAT GACCGCTATATGGCCATCTGTAATCCATTGCTCTACAGTAGCAAAATGTCCCAAGGTGTT TGTGTCCACCTGGTCATTGTCCCTTATGTCTATGGCTTTCTTCTCAGTGTGATGGAAACC TTAAGGACCTACAACCTCTCCTTCTGTGGAACAAATGAAATCAACCATTTCTACTGTGCT GATCCTCCTCTTATCAAACTGGCATGCTCTGACACGTACAGCAAGGAGCTGTCCATGTAC ATAGTAGCCGGCTACAGCAACGTCCAGTCTCTTCTGATCATTCTCACATCCTACATGTTC ATCCTTGTCGCTATCCTCAGAAGCCATTCTGCAGAGGGAAGGAAAAAAGCTTTTTCCACA TGTGGTTCCCACCTGACAGTTGTCACAATCTTCTATGGAACCCTCTTCTGCATGCATTTG AGACGTCCCACAGACGAGTCCGTGGAGCAGGGGAAAATGGTGGCTGTGTTTTACACCACA GTGATACTCATGCTGAACTCCATGATCTATGGCCTCAGGAACAAGGATGTGAAAGAGGCG TTGAAAAAAGCAATAGGAAAACAAACATTGGGAAAA |
| Conceptual translation |
MSRRNYTELTEFVLLGLTSRPELRVAFLALFLFVYIATVVGNLGMIILIKVDSRLHTPMXbr/>FFLSSLSILDLCFSTNFTPKMLENFLSEKKTISYAGCLMQCYVVIAVVLAEHCMLAVMAY DRYMAICNPLLYSSKMSQGVCVHLVIVPYVYGFLLSVMETLRTYNLSFCGTNEINHFYCA DPPLIKLACSDTYSKELSMYIVAGYSNVQSLLIILTSYMFILVAILRSHSAEGRKKAFST CGSHLTVVTIFYGTLFCMHLRRPTDESVEQGKMVAVFYTTVILMLNSMIYGLRNKDVKEA LKKAIGKQTLGK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 56,247,729 | 56,247,729 | SNP | A/G | rs73469347 (DbSNP) | |
| 11 | 56,247,267 | 56,247,267 | SNP | C/T | rs633690 (DbSNP) | |
| 11 | 56,247,631 | 56,247,631 | SNP | G/T | rs7109610 (DbSNP) | |
| 11 | 56,479,625 | 56,479,625 | SNP | C/T | 1000GP (CEU) | |
| 11 | 56,479,791 | 56,479,791 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 56,480,155 | 56,480,155 | SNP | G/T | 1000GP (CEU) | |
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 123 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.