OR5M4P Olfactory Receptor
| Gene Symbol | OR5M4P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | M |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-188, HsOR11.11.68P, ORL3506 |
| External Ids | HGNC: 14808 GeneBank: AB065503, AF399357, BK004716, NG_004152 ORDB: ORL3506 |
| Build #39 labels | OR5M4P |
| Chromosomal location | 11:56,448,668-56,449,592 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5M3 | 94.81% | 308 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5M3 | 88% | 308 |
| Mouse | Or5m3 | 90% | 307 |
| Mouse | Or5m3b | 88% | 307 |
| Rat | Or5m3 | 90% | 307 |
| Cow | OR5M3 | 88% | 307 |
| Cow | OR5M3DP | 85% | 306 |
| Orang | OR5E1P | 51% | 303 |
| Horse | OR5M3 | 91% | 308 |
| Chimp | OR5M3P | 92% | 308 |
| Chimp | OR5M3DP | 90% | 308 |
Sequence information
| Nucleotide sequence |
ATGCTCAATTTCACCGATGTGACAGAGTTCATTCTTTTGGGGCTAACGAGCCGTCGGGAA TGGCAAGTTCTCTTCTTCATCGTTTTTCTTGTGGTCTACATTATCACCGTGGTGGGCAAT ATCGGCATGATGTTGTTAATCAAGGTCAGTCCTCAGCTTAACAGCCCCATGTACTTTTTC CTCAGTCACTTGTCATTTGTTGATGTGTGGTTTTCTTCCAATGTCACCCCTAAAATGTTG GAAAATCTGTTATCAGATAAAAAAAAAAACAATTTCTTATGCTGGCTGTTTAGCACAGTG TTTCTTCTTCATTGCTCTTGTCCATGTGGAAATTTTTATTCTTGCTGCGATTGCCTTTGA TAGATACACAGTGATTGGAAATCCTTTGCTTTATGGCAGCAAAATGTCAAGGGATGTCTG TATTCGACTGATTACTTTCCCTTACATTTATGGTTTTCTGACGAGTCTGACAGCAACATT ATGGACTTATGGCTTGTACTTCTGTGGAAAAATTGAGATCAACCATTTCTACTGTGCAGA TCCACCTCTCATCAAAATGGCCTGTGCCGGGACCTTTGTAAAAGAATATACAATGCTCAT ACTTGCCGGCATCAACTTCACATATTCCCTGACTGTAATTATCATCTCTTACTTATTCAT CCTCATTGCCATTCTGCGAATGCGCTCAGCAGAAGGAAGGCAGAAGGCCTTTTCCACATG TGGGTCCCATCTGACAGCTGTCATCATATTCTATGGTACTCTGATCTTCATGTATCTCAG ACGTCCCACAGAGGAGTCTGTGGAGCAGGGGAAGATGGTGGCTGTGTTCTATACCACAGT GATCCCCATGTTGAATCCCATGATCTACAGTCTGAGGAACAAGGATGTGAAAAAGGCCAT GATGAAAGTGATCAGCAGATCATGT |
| Conceptual translation |
MLNFTDVTEFILLGLTSRREWQVLFFIVFLVVYIITVVGNIGMMLLIKVSPQLNSPMYFF LSHLSFVDVWFSSNVTPKMLENL\QIKKKTISYAGCLAQCFFFIALVHVEIFILAAIAF DRYTVIGNPLLYGSKMSRDVCIRLITFPYIYGFLTSLTATLWTYGLYFCGKIEINHFYCA DPPLIKMACAGTFVKEYTMLILAGINFTYSLTVIIISYLFILIAILRMRSAEGRQKAFST CGSHLTAVIIFYGTLIFMYLRRPTEESVEQGKMVAVFYTTVIPMLNPMIYSLRNKDVKKA MMKVISRSC Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI) | |
| 11 | 56,216,402 | 56,216,403 | Del(2) | -/AA | rs71652038 (DbSNP) | |
| 11 | 56,216,403 | 56,216,402 | Ins(1) | -/A | rs66604620 (DbSNP) | |
| 11 | 56,216,404 | 56,216,405 | In-Del(2) | -/TT | rs10584836 (DbSNP) | |
| 11 | 56,216,413 | 56,216,412 | Ins(1) | -/A | rs57300944 (DbSNP) | |
| 11 | 56,216,418 | 56,216,418 | SNP | A/T | rs61902031 (DbSNP) | |
| 11 | 56,216,429 | 56,216,429 | SNP | C/T | rs61902032 (DbSNP) | |
| 11 | 56,216,437 | 56,216,437 | SNP | C/T | rs61902033 (DbSNP) | |
| 11 | 56,216,651 | 56,216,651 | Del(1) | -/A | rs35986277 (DbSNP) | |
| 11 | 56,216,821 | 56,216,821 | SNP | A/G | rs11228420 (DbSNP) | |
| 11 | 56,449,163 | 56,449,163 | SNP | G/T | 1000GP (CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 122 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.