OR5P1P Olfactory Receptor
| Gene Symbol | OR5P1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | P |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-92, PJCG1, HsOR11.5.3P, ORL3490 |
| External Ids | HGNC: 14779 GeneBank: AB065514, AF220493, AF399365, BK004689, NG_004139 ORDB: ORL3490 |
| Build #39 labels | OR5P1P |
| Chromosomal location | 11:7,772,893-7,773,814 (-) |
| Cluster | 11@8 |
| Synteny | CLIC#25 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5P3 | 70.74% | 311 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5P5 | 70% | 307 |
| Mouse | Or5p1 | 81% | 310 |
| Rat | Or5p1 | 80% | 310 |
| Cow | OR5P1 | 80% | 310 |
| Orang | OR5P3 | 70% | 311 |
| Horse | OR5P1B | 81% | 308 |
| Horse | OR5P1 | 81% | 308 |
| Chimp | OR5P3 | 70% | 311 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529258 |
Sequence information
| Nucleotide sequence |
ATGGAGATTGGAAACCATACCACAGTGACAGAGTTTATTATTTTGGGGTTAACTGAGGAT CCTACACTTTGTGACATCTTCTTTGTGATATTTCTAGGAATCTACATTGTCACCTTAATA GGCAATATCAGCATAATAAAGAAGCTGTTCCCAACTTCACACTCCCATGTACCTGTTCCT CAGCCACTTGGCTTTTGTGGACATAGGGCTTGCCACAGTAGTCACACCTATAATGCTTAT GGGATTCCTAAGACGTGGAACAGCCCTCCCTGTCACTAGCTGTGAAGCCCAGCTCTGTTC TGTAGTCATGTTTGGGACGTCTGAATGCTTCCTACTGGCGACCATGGCCTATGATCGCTA TGTGGCCATCTGCTCACCCCTGGTGAACTCCACCCACTTGTCCCCCATAATCTGCATACT CTTAGTGGGGGTTTGCTACCTGGGTGGATGTGTGAATGCCTCAACATTTACTAGTTGTTT ATTGAGTCTGTCTTTCTGTGGACCAAATCAGATAGATCATTTTTTCTGTGATTTCTCTCC TTTGTTGAAACTTTCCTGCTCAAATATCTCCATTCCTGAAATTATCCCTTCCATCTCTTC TGGATCTATCATTGTGGTCACAGTATTTGCCATAGCCATCTCCTACATCTACATCCTCAT CACCATCCTGAAGATGCGCTCCGCCGAGGGGCGCCACAAGGCCTTCTCCACCTGTACCTC CCACCTCGCTGCGGTTACTCTCTACTATGGAACGATTACCTTCATTTATGTGATGCCCAA ATCCAGTTACTCAACTAGCCAGAACAGATTGATATCGCTGTCCTACACAGTGGTAATCCC CATACTGAACCCCTTTATCTATAGTCTGAGGAACAGAGATGTAAAGGAGGCACTAAGAAA GGCAACTGTCAGAATATATTCT |
| Conceptual translation |
MEIGNHTTVTEFIILGLTEDPTLCDIFFVIFLGIYIVTLIGNISIIKK\SQLHTPMYLF LSHLAFVDIGLATVVTPIMLMGFLRRGTALPVTSCEAQLCSVVMFGTSECFLLATMAYDR YVAICSPLVNSTHLSPIICILLVGVCYLGGCVNASTFTSCLLSLSFCGPNQIDHFFCDFS PLLKLSCSNISIPEIIPSISSGSIIVVTVFAIAISYIYILITILKMRSAEGRHKAFSTCT SHLAAVTLYYGTITFIYVMPKSSYSTSQNRLISLSYTVVIPILNPFIYSLRNRDVKEALR KATVRIYS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | C/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 11 | 7,772,998 | 7,772,998 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 11 | 7,773,039 | 7,773,039 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 11 | 7,773,103 | 7,773,103 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 11 | 7,773,177 | 7,773,177 | SNP | T/C | 1000GP (CEU) | |
| 11 | 7,773,429 | 7,773,429 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 11 | 7,773,433 | 7,773,433 | SNP | C/G | 1000GP (CEU, CHBJPT) | |
| 11 | 7,794,517 | 7,794,517 | SNP | G/A | rs61743345 (DbSNP) | |
| 11 | 7,794,545 | 7,794,545 | SNP | A/C | rs1482784 (DbSNP) | |
| 11 | 7,794,553 | 7,794,553 | SNP | G/A | rs61743353 (DbSNP) | |
| 11 | 7,794,586 | 7,794,586 | SNP | G/T | rs12271325 (DbSNP) | |
| 11 | 7,794,650 | 7,794,650 | SNP | C/G | rs371799 (DbSNP) | |
| 11 | 7,794,659 | 7,794,659 | SNP | A/G | rs383598 (DbSNP) | |
| 11 | 7,794,677 | 7,794,677 | SNP | G/T | rs397963 (DbSNP) | |
| 11 | 7,794,724 | 7,794,724 | SNP | C/T | rs12293183 (DbSNP) | |
| 11 | 7,794,773 | 7,794,773 | SNP | A/T | rs61739065 (DbSNP) | |
| 11 | 7,794,976 | 7,794,976 | SNP | A/T | rs980145 (DbSNP) | |
| 11 | 7,794,980 | 7,794,980 | SNP | C/G | rs12285181 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 7,785,603 | 7,838,917 | CopyNumber | Variation_35016 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR5P1P.aApr07-unspliced | main_exon | CDS_partial | chr11 | 7,772,962 | 7,773,471 | - |