OR5P4P Olfactory Receptor
| Gene Symbol | OR5P4P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | P |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.5.2P, ORL3645 |
| External Ids | HGNC: 15295 GeneBank: AF399367, NG_004189 ORDB: ORL3645 |
| Build #39 labels | OR5P4P |
| Chromosomal location | 11:7,745,990-7,746,909 (+) |
| Cluster | 11@8 |
| Synteny | CLIC#25 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5P1P | 64.4% | 309 |
| OR5P3 | 66.01% | 303 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5P4 | 88% | 312 |
| Mouse | Or5p4 | 83% | 311 |
| Rat | Or5p4 | 83% | 311 |
| Cow | OR5P4 | 85% | 311 |
| Orang | OR5P1P | 65% | 304 |
| Horse | OR5P4 | 88% | 312 |
| Chimp | OR5P1P | 66% | 309 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | BF328527 |
Sequence information
| Nucleotide sequence |
ATGGAGACTGAAAACAATACAACAGTGACAGAGTTCATTATTTTGGGATTAACAGACAAT CCTATGCTATGTGCCATTTTCTTCGTGTTTTTTCTAGCAGTTTATATAGTTACTATACCG GGAAATATTAGCATAATCCTCTTAATCCAAAGCAGCCCACAGCTTCACACGCTAATGTAC CTTTTTCTCAGCCATTTGGCTTCTGTGGACATTGGGTATTCCATATCAGTTACGCCAATC ATTCTCATCAATTTCTTAAGAGAGAAAACGACTATTCCTGTCACAGGCTGTATAGCACAG CTTGGCTCTGATGTCATGTTTGGAACCACAGAGTGCTTCCTGCTGGTCACTATGTGGCTA TCTGCTCTCCCCTGCTTTACTCCATCCAAATGCCCCCAGTCGTCTGCTTCCTCCTACTGG GAGCCTCCTACCTGGGTGGATGCCTGAACGCTTCGTCTTTTACAGGCTGTTTGATGAACC TGTCCTTCTGCGGTCCAAATAAAATCAACCACTTTTTCTGTGACCTCTTCCCACTCTTGA AGCTTTCTTGTGGCCATGTTTACATTGCTGAAATATCCCCTGCCATCTCCTCTGCATCTG TCCTTATCAGCACGCTGTTTACCATAATCGTGTCCTACATCTACATCCTTCACTCCATCC TGAAGGTGTGCTCTACTGAGGGAAGGAAGAAGGCTTTCTCCACCTGCGCTTCCCACCTCA CTGCAGTCACTTTGTTCTATGGGACCATTTTGTTTGTTTATGTGATGCCCAAGTCAAGCT ATTCAGCGGATCAGGTCAAGGTGGCATTTGTGATCTACACGGTGGTGATTCCCATGCTGA ACCCCCTCATCTACAGTCTCAGGAATAAGGAGGTGAAAGAGGCCATGAGAAAATTGATGG CAAGAACACATTGGTTTTCC |
| Conceptual translation |
METENNTTVTEFIILGLTDNPMLCAIFFVFFLAVYIVTIPGNISIILLIQSSPQLHTLMY LFLSHLASVDIGYSISVTPIILINFLREKTTIPVTGCIAQLGSDVMFGTTECFLL/HYV AICSPLLYSIQMPPVVCFLLLGASYLGGCLNASSFTGCLMNLSFCGPNKINHFFCDLFPL LKLSCGHVYIAEISPAISSASVLISTLFTIIVSYIYILHSILKVCSTEGRKKAFSTCASH LTAVTLFYGTILFVYVMPKSSYSADQVKVAFVIYTVVIPMLNPLIYSLRNKEVKEAMRKL MARTHWFS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI) | |
| 11 | 7,745,992 | 7,745,992 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 7,746,108 | 7,746,108 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 7,746,162 | 7,746,162 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 7,746,213 | 7,746,213 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 7,746,320 | 7,746,320 | SNP | G/C | 1000GP (CEU) | |
| 11 | 7,746,777 | 7,746,777 | SNP | G/A | 1000GP (CEU) | |
| 11 | 7,767,539 | 7,767,539 | SNP | A/G | rs12226332 (DbSNP) | |
| 11 | 7,767,655 | 7,767,655 | SNP | C/T | rs7951346 (DbSNP) | |
| 11 | 7,767,709 | 7,767,709 | SNP | C/T | rs7940676 (DbSNP) | |
| 11 | 7,767,760 | 7,767,760 | SNP | C/T | rs7940802 (DbSNP) | |
| 11 | 7,768,001 | 7,768,001 | SNP | G/T | rs57412179 (DbSNP) | |
| 11 | 7,768,128 | 7,768,128 | SNP | C/G | rs810424 (DbSNP) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.